View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6563_high_7 (Length: 604)
Name: NF6563_high_7
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 34765513 - 34765170
Alignment:
| Q |
9 |
ttattctcaacaataatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatcca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34765513 |
ttattctcaacaataatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatcca |
34765414 |
T |
|
| Q |
109 |
gttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccaca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34765413 |
gttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccaca |
34765314 |
T |
|
| Q |
209 |
atgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaacattgttgttaatatgtactttgaagatat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34765313 |
atgagttcattgtcacattcctcgttccaacacttgatcctctcactctttcaatgcatcaaaccttgaacattgttgttaatatgtactttgaagatat |
34765214 |
T |
|
| Q |
309 |
ttgatttttggtttggaattggctattagaggcaggtcacttta |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34765213 |
ttgatttttggtttggaattggctattagaggcaggtcacttta |
34765170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 182 - 458
Target Start/End: Original strand, 6440469 - 6440754
Alignment:
| Q |
182 |
atgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaacat |
281 |
Q |
| |
|
|||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||| | ||| ||||||| |
|
|
| T |
6440469 |
atgtgaaattcattatcgttaaccacaatgagttcattgtcacattcctcgttccaacatttggtcgtctcactccttcaatgtagcaagtattgaacac |
6440568 |
T |
|
| Q |
282 |
tgttgttaatatgtactttgaagatatttgatttttggtttggaattggctattagaggcaggtcactttactattgtatgtttttgtttgg-------- |
373 |
Q |
| |
|
| ||| |||| || ||| |||||||||||||||||||||||||||||| | ||||| | |||| | ||| |||| || ||| ||||||||| |
|
|
| T |
6440569 |
tattg-taatgtgcccttcgaagatatttgatttttggtttggaattgggttttagaagtaggttaattttctatagtttgtatttgtttggcttgacac |
6440667 |
T |
|
| Q |
374 |
--ctttataatacaaatttagttccgccttggcacgttttttggtctcaaatgttggtcctgtaacttgttatgccttaactcaaaa |
458 |
Q |
| |
|
||||||| ||||||||| |||| |||||| | ||||| |||||||| |||||| |||||||||| |||||||| ||||||| |
|
|
| T |
6440668 |
atctttatactacaaattttgttctatcttggcttatgttttgatctcaaattttggtcttgtaacttgtcatgccttatctcaaaa |
6440754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 44015464 - 44015301
Alignment:
| Q |
9 |
ttattctcaacaataatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatcca |
108 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||| ||||||||| |||| | |||||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
44015464 |
ttattctcaacaataat-ttattaacaggctcaataccaaaatctgttagaaatctacagaagctaactcttttggatttgagttataatagcttatctg |
44015366 |
T |
|
| Q |
109 |
gttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaat |
173 |
Q |
| |
|
|| |||| |||| |||| ||||||||| |||||| | ||||| |||||| |||||||||||||| |
|
|
| T |
44015365 |
gtagcatacctccagagattggtcatgttacaagcctaacaatcagtttggatttgagctcaaat |
44015301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 895501 - 895426
Alignment:
| Q |
205 |
cacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaaca |
280 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||| ||| |||||| |||| ||||||||| ||| |||||||| |
|
|
| T |
895501 |
cacaatgaattcattgtcacattcatcattccaacactttctcctcttactccttcaatgcaacaagtcttgaaca |
895426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 905139 - 905214
Alignment:
| Q |
205 |
cacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaaca |
280 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||| ||| |||||| |||| ||||||||| ||| |||||||| |
|
|
| T |
905139 |
cacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
905214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 590
Target Start/End: Original strand, 32588704 - 32588761
Alignment:
| Q |
533 |
gaatacgcttcctttaccgagtatccatttcttgaccattcccatttgtcttcttcat |
590 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||| |||| |||||||| |||| |
|
|
| T |
32588704 |
gaatacgcttcttttaccgaatatccatttctagaccaaacccacttgtcttcctcat |
32588761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University