View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_high_8 (Length: 591)
Name: NF6563_high_8
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 16 - 552
Target Start/End: Original strand, 41186187 - 41186723
Alignment:
| Q |
16 |
catattgtacattgtgttacttttggtctttgtgttttgacatatttcctttttgtttgccaataatttgactaatgtagaaaaaacttttgatggttta |
115 |
Q |
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| T |
41186187 |
catattgtacattgtgttacttttgatctttgtgttttgacatatttcctttttgtttgccaataatttgactaatgtagaaaaaacttttgatggttta |
41186286 |
T |
|
| Q |
116 |
tagtttcaatattatacaagtattgagatacaagattatattgattagtatagagtatagacaatattttagatccgtatcaaaattaaatgtgttggac |
215 |
Q |
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| T |
41186287 |
tagtttcaatattatacaagtattgagatacaagattatatagattagtatagagtatagacaatattttagatccgtatcaaa-ttaaatgtgttggac |
41186385 |
T |
|
| Q |
216 |
attaatagtttgagttcttttggtattttctgttttcatttttgttcattagataaatattagaaaatgcattgtataggaataagaagaagaaaaacta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41186386 |
attaatagtttgagttcttttggtattttctgttttcatttttgttcattagataaatattagaaaatgcattgtataggaataagaagaaaaaaaacta |
41186485 |
T |
|
| Q |
316 |
aagcctaatgaaggttgcccctaaacatcaaatatgtaagacaaggcggaggaaagcaagggagggaagaaatctattttctttaaatcttagattgaag |
415 |
Q |
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| T |
41186486 |
aagcctaatgaaggttgcccctaaacatcaaatatgtaagacaaggcggaggaaagcaagggagggaagaaatctattttctttaaatcttagattgaag |
41186585 |
T |
|
| Q |
416 |
tag-ttcaaatttagtcaaccaatcaacctaactctcaagatattcatttacaacaagccccactcaagctatttgaaatgcatatgtttaaccaaagaa |
514 |
Q |
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| T |
41186586 |
tagcttcaaatttagtcaaccaatcaacctaactctcaagatattcatttacaacaagccccactcaagctatttgaaatgcatatgtttaaccaaagaa |
41186685 |
T |
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| Q |
515 |
gcatatggatgaatataaggaacctcattttggtcaac |
552 |
Q |
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| T |
41186686 |
gcatatggatgaatataaggaacctcattttggtcaac |
41186723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 47874044 - 47874173
Alignment:
| Q |
16 |
catattgtacattgtgttacttttggtcttt-gtgttttgacatatttcctttttgtttgccaataatttgactaatgtagaaaaaacttttgatggttt |
114 |
Q |
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|||||||||||| ||||||||| |||||||| | | || || ||||||||||||||||||||| |||| ||||| |||| |||||||| | ||||||| |
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| T |
47874044 |
catattgtacatcgtgttacttgtggtcttttgcgcttctacctatttcctttttgtttgccaa-aattggactagagtaggaaaaacttgttatggttt |
47874142 |
T |
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| Q |
115 |
atagtttcaatattatacaagtattgagata |
145 |
Q |
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| T |
47874143 |
gtagtttcaatattagacaagtattgagata |
47874173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 49287562 - 49287659
Alignment:
| Q |
29 |
gtgttacttttggtctttgtgttttgacatatttcctttttgtttgccaataatttgactaatgtagaaaaaacttt-tgatggtttatagtttcaat |
125 |
Q |
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| T |
49287562 |
gtgttacttcgggtctttgtgtttcgatctatttcctttctgtttgccaataatttgacaaaagtaagaaaaactttgcaatggtttgtagtttcaat |
49287659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 49440254 - 49440175
Alignment:
| Q |
58 |
tatttcctttttgtttgccaataatttgactaatgtagaaaaaacttttgatggtttatagtttcaatattatacaagta |
137 |
Q |
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| T |
49440254 |
tatttcctttttgtttgcaaataatttgatcatagtagaaaaaacttgccatgatttgtagtttgaatattagacaagta |
49440175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 48179622 - 48179700
Alignment:
| Q |
62 |
tcctttttgtttgccaataatttgactaatgtagaaaaaacttttgatggtttatagtttcaatattatacaagtattg |
140 |
Q |
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| T |
48179622 |
tcctttttgctagccaataatttgactagagtagaaaaagcttgcaatggtttgtagtttacatattagacaagtattg |
48179700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 49540385 - 49540295
Alignment:
| Q |
39 |
tggtctttgtgttttgacatatttcctttttgtttgccaataatttgactaatgtagaaaaaacttttgatggtttatagtttcaatatta |
129 |
Q |
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| T |
49540385 |
tggtctttgtgtttcggtctatttcatttttgtttgccaataattaggcaatagaaggaaaaactttcaatggtttgtagtttcaatatta |
49540295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 37847376 - 37847433
Alignment:
| Q |
31 |
gttacttttggtctttgtgttttgacatatttcctttttgtttgccaataatttgact |
88 |
Q |
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| T |
37847376 |
gttacttgtggtctttgtgtttgcatccatttcatttttgtttgccaataatttgact |
37847433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 43156116 - 43156057
Alignment:
| Q |
30 |
tgttacttttggtctttgtgttttgacatatttcctttttgtttgccaataatttgacta |
89 |
Q |
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| T |
43156116 |
tgttacttgtgatctttgtgttttgacctatttcctttttgcttgccaataatttaacta |
43156057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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