View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_12 (Length: 513)
Name: NF6563_low_12
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 29 - 508
Target Start/End: Original strand, 32001495 - 32001971
Alignment:
| Q |
29 |
gatatggaaacaattcaatttaactaagcataacacagaagttggtcatggtcatggtcatgataacaataacactatgttgaactttcagcaagatgat |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32001495 |
gatatggaaacaattcaatttaactaagcataacacagaaggtggtcatggtcatg------ataacaataacactatgttgaactttcagcaagatgat |
32001588 |
T |
|
| Q |
129 |
gatattatggcggctgtggaagcatgtagatcaagcgggggatttgataataatattaactcccctcctatttcaacaaatgttcttcaaggtcttgagg |
228 |
Q |
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||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
32001589 |
gatattatggcggctgtggaagcatttagagcaagcggtggatttgataataatattaacacccctcctatttcaacaaatgttcttcaagttcttgagg |
32001688 |
T |
|
| Q |
229 |
gtggtaagca---ggaaaatttgtatggaagcatgatgtgtaacgtgaatctcgaggagaataagcattattggaatagcatacttggtttggttaatga |
325 |
Q |
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||||| | || |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32001689 |
gtggtgatcatcaggaaaatttggatggaagcatgatatgtaacgtgaatctcgaggagaataagcattattggaatagcatacttggtttggttaatga |
32001788 |
T |
|
| Q |
326 |
atctgatgatatgaacagtatcctataacgaagctattgatcataggtagagctagctagctagctatagtagctgtttggctatagggagtacttaatt |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32001789 |
atctgatgatatgaacagtatcctataacgaagctattgatcataggtagagctagctagctagctatagtagctgtttggctatagggagtacttaatt |
32001888 |
T |
|
| Q |
426 |
aggatagttcaatgagttgataataatgcaatgtcggcttcatttggaccaaaaaacacgtcttagttgttacctttgcttct |
508 |
Q |
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| T |
32001889 |
aggatagttcaatgagttgataataatgcaatgtcggcttcatttggaccaaaaaacacgtcttagttgttaccttagcttct |
32001971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 29 - 508
Target Start/End: Original strand, 31942536 - 31943012
Alignment:
| Q |
29 |
gatatggaaacaattcaatttaactaagcataacacagaagttggtcatggtcatggtcatgataacaataacactatgttgaactttcagcaagatgat |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
31942536 |
gatatggaaacaattcaatttaactaagcataacacagaaggtggtcatggtcatg------ataacaataacactatgttgaactttcagcaagatgat |
31942629 |
T |
|
| Q |
129 |
gatattatggcggctgtggaagcatgtagatcaagcgggggatttgataataatattaactcccctcctatttcaacaaatgttcttcaaggtcttgagg |
228 |
Q |
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||||||||||||||||||||||||| |||| ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
31942630 |
gatattatggcggctgtggaagcatttagagcaagcggtggttttgataataatattaacacccctcctatttcaacaaatgttcttcaagttcttgagg |
31942729 |
T |
|
| Q |
229 |
gtggtaagca---ggaaaatttgtatggaagcatgatgtgtaacgtgaatctcgaggagaataagcattattggaatagcatacttggtttggttaatga |
325 |
Q |
| |
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||||| | || |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31942730 |
gtggtgatcatcaggaaaatttggatggaagcatgatttgtaacgtgaatctcgaggagaataagcattattggaatagcatacttggtttggttaatga |
31942829 |
T |
|
| Q |
326 |
atctgatgatatgaacagtatcctataacgaagctattgatcataggtagagctagctagctagctatagtagctgtttggctatagggagtacttaatt |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31942830 |
atctgatgatatgaacagtatcctataacgaagctattgatcataggtagagctagctagctagctatagtagctgtttggctatagggagtacttaatt |
31942929 |
T |
|
| Q |
426 |
aggatagttcaatgagttgataataatgcaatgtcggcttcatttggaccaaaaaacacgtcttagttgttacctttgcttct |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
31942930 |
aggatagttcaatgagttgataataatgcaatgtcggcttcatttggaccaaaaaacacgtcttagttgttaccttagcttct |
31943012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 179 - 388
Target Start/End: Original strand, 32004565 - 32004779
Alignment:
| Q |
179 |
taatattaactcccctcctatttcaacaaatgttcttcaaggt------cttgagggtggtaagcaggaaaatttgtatggaagcatgatgtgtaacgtg |
272 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||| ||| | ||||||||| || | |||||||||||| ||||||||||||||||||||||| |
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|
| T |
32004565 |
taatattaatacacctcctatttcaacaaatattcttgaagttaaatttcttgagggtagtgatcaggaaaatttggatggaagcatgatgtgtaacgtg |
32004664 |
T |
|
| Q |
273 |
aatctcgaggagaataagcattattggaatagcatacttggtttggttaatgaatctgatgatatgaacagtatcctataacgaagctattgatcatagg |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| ||| |||||| |||||||| ||||||||| |
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| T |
32004665 |
aatctcgaggagaataagcattattggaatagca-acttggtttggttaatgaatctcatgatttgaacattatgctataatgaagctatagatcatagg |
32004763 |
T |
|
| Q |
373 |
tagagctagctagcta |
388 |
Q |
| |
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|||||||||||||||| |
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|
| T |
32004764 |
tagagctagctagcta |
32004779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 403 - 470
Target Start/End: Original strand, 32004889 - 32004956
Alignment:
| Q |
403 |
ttggctatagggagtacttaattaggatagttcaatgagttgataataatgcaatgtcggcttcattt |
470 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
32004889 |
ttggctatagggagtacttaattaggatagttcaatgagttgataataatgcaatgtcgacttcattt |
32004956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 32004254 - 32004361
Alignment:
| Q |
77 |
tggtcatggtcatgataacaataacactatgttgaactttcagcaagatgatgatattatggcggc------tgtggaagcatgtagatcaagcggggga |
170 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||||||||||||||| || ||||||||||||| ||||||||||| ||||||| | || ||| |
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| T |
32004254 |
tggtcatgatcatgataacaataacact--gttgaactttcagcaagataattatattatggcggcattacatgtggaagcatttagatcatgtggtgga |
32004351 |
T |
|
| Q |
171 |
tttgataata |
180 |
Q |
| |
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|||||||||| |
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|
| T |
32004352 |
tttgataata |
32004361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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