View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6563_low_16 (Length: 470)
Name: NF6563_low_16
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 26 - 454
Target Start/End: Original strand, 5886324 - 5886755
Alignment:
| Q |
26 |
catgttccttggaatcagatgaat---ccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaagggcttcaagtttaac |
122 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5886324 |
catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatcattgactaatttaggcacaagggcttcaagtttaac |
5886423 |
T |
|
| Q |
123 |
caaattatgatcatcatgatattgatcatattgttgcattaatgaactttggttgattgaggtgccactttttgaaatttgattttccaattgacttgta |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5886424 |
caaattatgatcatcatgatattgatcatattgttgcattaatgaactttggttgattgaggtgccactttttgaaatttgattttccaattgacttgga |
5886523 |
T |
|
| Q |
223 |
ttgagatcaaaagctacacaatccaatgaccatgtatcttcacaagaggaaggattagatggtagtactatttcaggtataattggattttgaatgggta |
322 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5886524 |
ttgagatcaagagctacacaatccaatgaccatgtatcttcacaagaggaaggattagatggtagtactatttcaggtataattggattttgattgggtg |
5886623 |
T |
|
| Q |
323 |
ggaacttggcattgaaattgttattgatgtctacctttgtatcaggttgttgaaaacattgcagatttggaaatgaatttgaaaggtataggagatcttg |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5886624 |
ggaacttggcattgaaattgttattgatgtctacctttgtatcaggttgttgaaaacattgcagatttggaaatgaatttgaaaggtataggagatcttg |
5886723 |
T |
|
| Q |
423 |
atggtaaggattgaagtttaggatcacattag |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5886724 |
atggtaaggattgaagtttaggatcacattag |
5886755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 183 - 454
Target Start/End: Original strand, 5842183 - 5842454
Alignment:
| Q |
183 |
ggtgccactttttgaaatttgattttccaattgacttgtattgagatcaaaagctacacaatccaatgaccatgtatcttcacaagaggaaggattagat |
282 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5842183 |
ggtgccattttttgaaatttgattttccaattgacttggattgagatcaagagctacacaatccaatgaccatgtatcttcacaagaggaaggattagat |
5842282 |
T |
|
| Q |
283 |
ggtagtactatttcaggtataattggattttgaatgggtaggaacttggcattgaaattgttattgatgtctacctttgtatcaggttgttgaaaacatt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||| ||| ||| |||||||||| |
|
|
| T |
5842283 |
ggtagtactatttcaggtataattggattttgattgggtaggaatctggcattgaaatggttattgatgtctaccattgtaccagtttggtgaaaacatt |
5842382 |
T |
|
| Q |
383 |
gcagatttggaaatgaatttgaaaggtataggagatcttgatggtaaggattgaagtttaggatcacattag |
454 |
Q |
| |
|
||| ||||||| | || ||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
5842383 |
gcatatttggagacgagtttgaaaggtataggtgatcttgatggtgaggattgaagtttagcatcacattag |
5842454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 183 - 454
Target Start/End: Original strand, 5848893 - 5849164
Alignment:
| Q |
183 |
ggtgccactttttgaaatttgattttccaattgacttgtattgagatcaaaagctacacaatccaatgaccatgtatcttcacaagaggaaggattagat |
282 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5848893 |
ggtgccattttttgaaatttgattttccaattgacttggattgagatcaagagctacacaatccaatgaccatgtatcttcacaagaggaaggattagat |
5848992 |
T |
|
| Q |
283 |
ggtagtactatttcaggtataattggattttgaatgggtaggaacttggcattgaaattgttattgatgtctacctttgtatcaggttgttgaaaacatt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||| ||| ||| |||||||||| |
|
|
| T |
5848993 |
ggtagtactatttcaggtataattggattttgattgggtaggaatctggcattgaaatggttattgatgtctaccattgtaccagtttggtgaaaacatt |
5849092 |
T |
|
| Q |
383 |
gcagatttggaaatgaatttgaaaggtataggagatcttgatggtaaggattgaagtttaggatcacattag |
454 |
Q |
| |
|
||| ||||||| | || ||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
5849093 |
gcatatttggagacgagtttgaaaggtataggtgatcttgatggtgaggattgaagtttagcatcacattag |
5849164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 5885888 - 5885984
Alignment:
| Q |
10 |
ataatactaagagcttcatgttccttggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaa |
106 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5885888 |
ataatactaagagcttcatgtttcttggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaa |
5885984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 5841569 - 5841662
Alignment:
| Q |
10 |
ataatactaagagcttcatgttccttggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
5841569 |
ataatactaagagcttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgactaattgaggca |
5841662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 5847723 - 5847816
Alignment:
| Q |
10 |
ataatactaagagcttcatgttccttggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
5847723 |
ataatactaagagcttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgactaattgaggca |
5847816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 5848279 - 5848372
Alignment:
| Q |
10 |
ataatactaagagcttcatgttccttggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
5848279 |
ataatactaagagcttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgactaattgaggca |
5848372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 5842004 - 5842158
Alignment:
| Q |
28 |
tgttccttggaatcagatgaat---ccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaagggcttcaagtttaacca |
124 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| ||| ||| | ||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| |
|
|
| T |
5842004 |
tgttccttggaatcagatgaataatctaggatgctacatgcataattttcaaggctttgatcattgagtaatttaggcacaatggcttcatgttcaacca |
5842103 |
T |
|
| Q |
125 |
aattatgatcatcatgatattgatcatattgttgcattaatgaactttggttgattga |
182 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5842104 |
agttatg---atcatgatattgatcatattgctgcattaatgaactttggttgattga |
5842158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 5848714 - 5848868
Alignment:
| Q |
28 |
tgttccttggaatcagatgaat---ccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaagggcttcaagtttaacca |
124 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| ||| ||| | ||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| |
|
|
| T |
5848714 |
tgttccttggaatcagatgaataatctaggatgctacatgcataattttcaaggctttgatcattgagtaatttaggcacaatggcttcatgttcaacca |
5848813 |
T |
|
| Q |
125 |
aattatgatcatcatgatattgatcatattgttgcattaatgaactttggttgattga |
182 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5848814 |
agttatg---atcatgatattgatcatattgctgcattaatgaactttggttgattga |
5848868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 454
Target Start/End: Original strand, 5947957 - 5948113
Alignment:
| Q |
304 |
attggattttgaatgggtaggaacttggcattgaaattgttattgatgtctacctttgtatcaggttgttgaaa---acattgcagatttggaaatgaat |
400 |
Q |
| |
|
||||||||||||||| | |||| |||||||| ||| || |||||||||||||||||||||| ||| ||||| || ||| ||||||||| |||| |
|
|
| T |
5947957 |
attggattttgaatgagagggaaattggcattataatggtcattgatgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgagg |
5948056 |
T |
|
| Q |
401 |
ttgaaaggtataggagatcttgatgg---taaggattgaagtttaggatcacattag |
454 |
Q |
| |
|
||||| |||||||| |||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
5948057 |
ttgaatggtataggtaatcttgatggttataatgattgaagttgaggatcacattag |
5948113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 454
Target Start/End: Original strand, 5983558 - 5983714
Alignment:
| Q |
304 |
attggattttgaatgggtaggaacttggcattgaaattgttattgatgtctacctttgtatcaggttgttgaaa---acattgcagatttggaaatgaat |
400 |
Q |
| |
|
||||||||||||||| | |||| |||||||| ||| || |||||||||||||||||||||| ||| ||||| || ||| ||||||||| |||| |
|
|
| T |
5983558 |
attggattttgaatgtgagggaaattggcattataatggtcattgatgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgagg |
5983657 |
T |
|
| Q |
401 |
ttgaaaggtataggagatcttgatgg---taaggattgaagtttaggatcacattag |
454 |
Q |
| |
|
||||| |||||||| |||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
5983658 |
ttgaatggtataggtaatcttgatggttataatgattgaagttgaggatcacattag |
5983714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 5920134 - 5920196
Alignment:
| Q |
70 |
tcctcaaggctttgatcattgactaatttaggcacaagggcttcaagtttaaccaaattatga |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| |||| |
|
|
| T |
5920134 |
tcctcaaggctttgatcattgactaatttaggcagagtggcttcaagttcaaccaaatcatga |
5920196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 5958747 - 5958883
Alignment:
| Q |
20 |
gagcttcatgttccttggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaagggcttcaagttt |
119 |
Q |
| |
|
||||||||||||| | ||||| ||||||||| ||||||| |||| ||| |||||||||||||||| ||| |||||| ||||||| | ||||||| |
|
|
| T |
5958747 |
gagcttcatgttcttgggaattagatgaatctaggatgctacaagcataatcctcaaggctttgatgattttctaattcaggcacagtttcatcaagttc |
5958846 |
T |
|
| Q |
120 |
aaccaaattatgatcatcatgatattgatcatattgttgcattaat |
165 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5958847 |
aaccaa---------atcatgatattgatcatattgttgcattaat |
5958883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 5983289 - 5983425
Alignment:
| Q |
20 |
gagcttcatgttccttggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaagggcttcaagttt |
119 |
Q |
| |
|
||||||||||||| | |||| ||||||||| |||||| |||| ||| |||||||||||||||| ||||||||||| ||||| | || ||||||| |
|
|
| T |
5983289 |
gagcttcatgttcttgcgaattagatgaatctaggatgttacaagcataatcctcaaggctttgatgattgactaattcaggcatagtagcatcaagttc |
5983388 |
T |
|
| Q |
120 |
aaccaaattatgatcatcatgatattgatcatattgttgcattaat |
165 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5983389 |
aaccaa---------atcatgatattgatcatattgttgcattaat |
5983425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 366
Target Start/End: Original strand, 5920258 - 5920436
Alignment:
| Q |
188 |
cactttttgaaatttgattttccaattgacttgtattgagatcaaaagctacacaatccaatgaccatgtatcttcacaagaggaaggattaga---tgg |
284 |
Q |
| |
|
|||||||||| ||||||||||| |||| || |||||||| || || || |||| |||||||||||||||||||| ||| |||||||||||| ||| |
|
|
| T |
5920258 |
cactttttgagatttgattttc---ttgattttgattgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattagacattgg |
5920354 |
T |
|
| Q |
285 |
tagtactatttcaggtataattggattttgaatgggtaggaacttggcattgaaattgttattg---atgtctacctttgtatca |
366 |
Q |
| |
|
| ||| ||||| ||| ||||||||||||||| | ||||| ||| |||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
5920355 |
ttgtaagatttctggt---attggattttgaatgtgaaggaaattgccattataatggttattgatcatgtctacctttgtatca |
5920436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 427
Target Start/End: Original strand, 5959043 - 5959166
Alignment:
| Q |
307 |
ggattttgaatgggtaggaacttggcattgaaattgttattgatgtctacctttgtatcaggttgttgaaa---acattgcagatttggaaatgaatttg |
403 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||| || |||||||||||||||||||||| ||| ||||| || |||| |||||||| |||| ||| |
|
|
| T |
5959043 |
ggattttgaatgtgaaggaaattggcattataatggtcattgatgtctacctttgtatcaatttgatgaaaattactttgctgatttggagatgaggttg |
5959142 |
T |
|
| Q |
404 |
aaaggtataggagatcttgatggt |
427 |
Q |
| |
|
|| |||||||| ||||||||||| |
|
|
| T |
5959143 |
aatggtataggtaatcttgatggt |
5959166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 5947683 - 5947792
Alignment:
| Q |
24 |
ttcatgttccttggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaagggcttcaagtttaacc |
123 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||||| | || | | |||||||||||||||| |||| |||||| ||||||| || ||||||| |||| |
|
|
| T |
5947683 |
ttcatgttcttgggaattagatgaatctaggatgctagaagcgtaatcctcaaggctttgatgattggctaattcaggcacagtagcatcaagttcaacc |
5947782 |
T |
|
| Q |
124 |
aaattatgat |
133 |
Q |
| |
|
|||| ||||| |
|
|
| T |
5947783 |
aaatcatgat |
5947792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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