View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6563_low_17 (Length: 465)
Name: NF6563_low_17
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_17 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 465
Target Start/End: Original strand, 55162074 - 55162526
Alignment:
| Q |
13 |
aatatatcatcaacactgtgagtcagtccaagctaatcttcacttcagcactcacacttcaaattaaaaacaattt-----ggtgtctcataggtaaggt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55162074 |
aatatatcatcaacactgtgagtcagtccaagctaatcttcacttcagcactcacacttcaaattaaaaacaatttaatttggtgtctcataggt----- |
55162168 |
T |
|
| Q |
108 |
atatattaaaagatatatagaagaatctaattatagttttgtctctctgatttgacagaaaagaaagcgtgccgtcaccgttcatgtatcagaccctaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55162169 |
atatattaaaagatatatagaagaatctaattatagttttgtctctctgatttgacagaaaagaaagcgtgccgtcaccgttcatgtatcagaccctaat |
55162268 |
T |
|
| Q |
208 |
ggaaagaaattacaaggagcttctgtgtttgtagagcaaatatcaaaagactttcctattggctctgcgatatcaaagaccattcttggcaacataccat |
307 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55162269 |
ggaaggaaattacaaggagcttctgtgtttgtagagcaaatatcaaaagactttcctattggctctgcgatagcaaagaccattcttggcaacataccat |
55162368 |
T |
|
| Q |
308 |
atcagaattggtttttgaaacggttcaatgctgcagtgtttgaaaacgagcttaaatggtatgccacagagcctcatgaaggcagagtcaactacacaat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55162369 |
atcagaattggtttttgaaacggttcaatgctgcagtgtttgaaaacgagcttaaatggtatgccacagagcctcatgaaggcagcgtcaactacacaat |
55162468 |
T |
|
| Q |
408 |
ttcagatcaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaat |
465 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55162469 |
ttcagaccaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaat |
55162526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University