View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_19 (Length: 464)
Name: NF6563_low_19
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 26 - 447
Target Start/End: Complemental strand, 35193014 - 35192593
Alignment:
| Q |
26 |
aaactaatgtgcatttgaatttgtttgtattannnnnnnnggctgtggattatagtgtcttctatttaaccaaaaaatatatgatttaaataaacactgt |
125 |
Q |
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| T |
35193014 |
aaactaatgtgcatttgaatttgtttgtattattttttttggctgtggattatagagtcttctatttaaccaaaaaagatatgatttaaataaacactgt |
35192915 |
T |
|
| Q |
126 |
catttttgtcaagttagcattattgtgttaatgttggaattgtactagtaccaagacagttttgcggtccatgttttattatgttaccattgctttttcc |
225 |
Q |
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| T |
35192914 |
catctttgtcaagttagcattattgtgttaatgttggaattgtactagtaccaagacagttttgcggtccatgttttattatgttaccattgctttttcc |
35192815 |
T |
|
| Q |
226 |
gtaaacatacaaacttatttactatgattctgtcacataacaccaaatgtgatttgatgtgtgtaagtctcggtcactagatgaagtaagacggttcata |
325 |
Q |
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| T |
35192814 |
gcaaacatacaaacttatttactatgattctgtcacataacaccaaatgtgatttgatgtgtgtaagtctcagtcactagatgaagtaagacagttcata |
35192715 |
T |
|
| Q |
326 |
ttttgagtttgtcttttaatctgattatgaaaatcagaatctgaacaatgtgattttcctctaacggctgagatacgttgacagccgcttgcgtatggat |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35192714 |
ttttgagtttgtcttttaatctgattatgaaaatcagaatctgaacaatgtgattttcctctaacggctgagatacgttgacagccgcttgcgtatggat |
35192615 |
T |
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| Q |
426 |
tttcaaatttcaaccacagaga |
447 |
Q |
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||||||||||||||| |||||| |
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| T |
35192614 |
tttcaaatttcaaccgcagaga |
35192593 |
T |
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