View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_20 (Length: 445)
Name: NF6563_low_20
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 49256947 - 49256537
Alignment:
| Q |
18 |
aaacatgcggagaagtagagccagaaagacttggaagtgaaggcaaacctgtttttcccagtttgtaaaacttgttataagggatagcaaaactgcttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49256947 |
aaacatgcggagaagtagagccagaaagacttggaagtgaaggcaaacctgtttttcccagtttgtaaaacttgttataagggatagcaaaactgcttga |
49256848 |
T |
|
| Q |
118 |
caggaggcaccaacaattatcccaatccaaagaccttttcctctcaattcaaaccagaaacccaatataacagcaattggaattccaaaaacataatagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49256847 |
caggaggcaccaacaattatcccaatccaaagaccttttcctctcaattcaaaccagaaacccaatataacagcaattggaattccaaaaacataatagg |
49256748 |
T |
|
| Q |
218 |
ctccaaggttcacatatgctcccaacttctgccaaccacatcctctagcaatacctataatagacaagtgttacattccatgtcataattcattcaggta |
317 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49256747 |
ctccaaggttcacatatgctcccaatttctgccaaccacatcctctagcaatacctataatagacaggtgttacattccatgtcataattcattcaggta |
49256648 |
T |
|
| Q |
318 |
ccatgaatttcatgnnnnnnntgaattattgtgcattgaattatagtaaaaagaaataaagagccaacctgaaagggtaccatgtaaactatctactata |
417 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49256647 |
ccatgaatttcatgaaaaaaatgaattattgtgcattgaattatagaaaaaagaaataaagagccaacctgaaagggtaccatgtaaactatctactata |
49256548 |
T |
|
| Q |
418 |
acagatagact |
428 |
Q |
| |
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| T |
49256547 |
acagatagact |
49256537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 313
Target Start/End: Complemental strand, 49269898 - 49269602
Alignment:
| Q |
27 |
gagaagtagagccagaaagacttggaagtgaaggcaaacctgtttttcccagtttgtaaaacttgttataagggatagcaaaactgcttgacaggaggca |
126 |
Q |
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|||| ||||||||| |||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||| |
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| T |
49269898 |
gagaggtagagccacaaagacttgggagcgaaggcaaacctgtttttcccagtttgtaaaacctgttataagggctagcaaaagtgcttgacagaaggca |
49269799 |
T |
|
| Q |
127 |
ccaacaattatcccaatccaaagaccttttcctctcaattcaaaccagaaacccaatataacagcaattggaattccaaaaacataataggctccaaggt |
226 |
Q |
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||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49269798 |
ccaacaagtatcccaatccacagtccttttcctctcaactcaaaccagaaacccaatataacagcaattggaattccaaaaacatagtaggctccaaggt |
49269699 |
T |
|
| Q |
227 |
tcacatatgctcccaacttctgccaaccacatcctctagcaatacc----------tataatagacaagtgttacattccatgtcataattcattca |
313 |
Q |
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| T |
49269698 |
tcacatatgctcccaacttctgccaaccagatcctctagcaatacctgtatataaatataatggacaagtgttacattccatagcataattcattca |
49269602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 420
Target Start/End: Complemental strand, 49269544 - 49269503
Alignment:
| Q |
379 |
agccaacctgaaagggtaccatgtaaactatctactataaca |
420 |
Q |
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|
| T |
49269544 |
agccaacctgaaagggtgccatgtaaactatccactataaca |
49269503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 30412508 - 30412601
Alignment:
| Q |
181 |
aatataacagcaattggaattccaaaaacataataggctccaaggttcacatatgctcccaacttctgccaaccacatcctctagcaataccta |
274 |
Q |
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|||| ||||| ||| ||||| |||| || |||||| ||||| | || ||| |||| || | |||||||||||||||||||||||||| ||||| |
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| T |
30412508 |
aatacaacagaaatgggaatgccaacaagataataagctcctaaattaacaaatgcaccaagcttctgccaaccacatcctctagcaacaccta |
30412601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 30379851 - 30379883
Alignment:
| Q |
244 |
ttctgccaaccacatcctctagcaatacctata |
276 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
30379851 |
ttctgccaaccacatcctcttgcaatacctata |
30379883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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