View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_26 (Length: 405)
Name: NF6563_low_26
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 23 - 398
Target Start/End: Original strand, 7568314 - 7568689
Alignment:
| Q |
23 |
cttgttatgatctgcaatgtcagtttagctgaaagagttttgaaagaaaaagaaccagcaaagtttgttgagaaagaaacaaaaggatttctaaaagcaa |
122 |
Q |
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| T |
7568314 |
cttgttatgatctgcaatgtcagtttagctgaaagagttttgaaagaaaaagaaccagcaaagtttgttgagaaagaaacaaaaggatttctaaaagcaa |
7568413 |
T |
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| Q |
123 |
tggttgatttcttatgggaaagtggaaagtcttcttatgaacctgtttggcctgtgagttcataacattattcattaattttcatatgtgttttggttaa |
222 |
Q |
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| T |
7568414 |
tggttgatttcttatgggaaagtggaaagtcttcttatgaacctgtttggcctgtgagttcataacattattcattaattttcatatgtgttttggttaa |
7568513 |
T |
|
| Q |
223 |
ttggtatttctttttatatagtatatatatctgaaatgcattatatttactggctggttgagcaggaaatgaaatttgattggaaaattatagttggatc |
322 |
Q |
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| T |
7568514 |
ttggtatttctttttatatagtatatatatctgaaatgcattatatttactggctggttgagcaggaaatgaaatttgattggaaaattatagttggatc |
7568613 |
T |
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| Q |
323 |
agttattggatttttgggagcagctttgggaagtgttggaggtgtaggaggtggtggaatttttgtccctatgctt |
398 |
Q |
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| T |
7568614 |
aattattggatttttgggagcagctttgggaagtgttggaggtgtaggaggtggtggaatttttgtccctatgctt |
7568689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 397
Target Start/End: Complemental strand, 33126845 - 33126727
Alignment:
| Q |
279 |
gttgagcaggaaatgaaatttgattggaaaattatagttggatcagttattggatttttgggagcagctttgggaagtgttggaggtgtaggaggtggtg |
378 |
Q |
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| T |
33126845 |
gttgagcaggaaatgaagtttggttggagaattgtcgtagggtctattgtcggattttttggagcagcattgggaagtgtaggaggggtaggaggtggag |
33126746 |
T |
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| Q |
379 |
gaatttttgtccctatgct |
397 |
Q |
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|||||||| |||||||||| |
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| T |
33126745 |
gaatttttatccctatgct |
33126727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 50747409 - 50747481
Alignment:
| Q |
325 |
ttattggatttttgggagcagctttgggaagtgttggaggtgtaggaggtggtggaatttttgtccctatgct |
397 |
Q |
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| T |
50747409 |
ttattggattttgtggagcagcgtttggaagtgttggaggtgtaggtggtggtggcatattcgttcctatgct |
50747481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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