View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_28 (Length: 364)
Name: NF6563_low_28
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 29158110 - 29158442
Alignment:
| Q |
15 |
ctgtggaggaaaagaccttgtgcaaaggcaacttttgcaagctgagtgacatttttctctaacatcagtacactgacattgaggtgggattgatcttgtg |
114 |
Q |
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| T |
29158110 |
ctgtggaggaaaagaccgtgtgcaaaggcaacttttgcaagctgagtgacatttttctttaacatcagtacactgacattgaggtgggattgatcttgtg |
29158209 |
T |
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| Q |
115 |
caagggcagaaatcacagcatgctgttgttgtggatttggtattagcttcaccattggaaagcagttgagtgatgaaggatgcccgatcgaaacgagcat |
214 |
Q |
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| T |
29158210 |
caagggcagaaatcacagcatgctgttgttgtggatttggtattagcttcaccattggagagcagttgagtgatgaaggatgcccgatcgaaacgagcat |
29158309 |
T |
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| Q |
215 |
caaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaacttcatcatcattgccttcttgttcatcatcagcaacattatcaccatcttttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||| |
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| T |
29158310 |
caaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaacttcatcatcattgccttcttgttcatcatcaacaccattatcactatcttttt |
29158409 |
T |
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| Q |
315 |
ctcactttctctcactcttactattatgtatgt |
347 |
Q |
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| T |
29158410 |
ctcactttctctcactcttactattatgtatgt |
29158442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 15 - 321
Target Start/End: Original strand, 29206710 - 29207022
Alignment:
| Q |
15 |
ctgtggaggaaaagaccttgtgcaaaggcaacttttgcaagctgagtgacatttttctctaacatcagtacactgacattgaggtgggattgatcttgtg |
114 |
Q |
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| T |
29206710 |
ctgtggaggaaaagatcttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatcagcacagtgacactgaggaggaattgattttgtg |
29206809 |
T |
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| Q |
115 |
caagggcagaaatcacagcatgctgttgttgtggattt------ggtattagcttcaccattggaaagcagttgagtgatgaaggatgcccgatcgaaac |
208 |
Q |
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||||||||| || |||||||||||||||||||||||| | | |||||||||||||||| |||||||||||||||||||||| | ||||||| |
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| T |
29206810 |
caagggcagctattacagcatgctgttgttgtggattttacttcgtaagtagcttcaccattggagagcagttgagtgatgaaggatgatccgtcgaaac |
29206909 |
T |
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| Q |
209 |
gagcatcaaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaacttcatcatcattgccttcttgttcatcatcagcaacattatcaccat |
308 |
Q |
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| T |
29206910 |
gagcatcaacaacagttgaagtgaagcccaaaaggaaaaccaacaaagctaacttcatcaccattgccttcttgttcatcatcaaatccattatcactat |
29207009 |
T |
|
| Q |
309 |
ctttttctcactt |
321 |
Q |
| |
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|| |||||||||| |
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| T |
29207010 |
ctctttctcactt |
29207022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 29144979 - 29145110
Alignment:
| Q |
15 |
ctgtggaggaaaagaccttgtgcaaaggcaacttttgcaagctgagtgacatttttctctaacatcagtacactgacattgaggtgggattgatcttgtg |
114 |
Q |
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||||||||||| ||| |||||||||| || ||||||||||||||||||||| |||||| || ||||||||| || |||||||| ||||||||| ||||| |
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| T |
29144979 |
ctgtggaggaatagattttgtgcaaagacagcttttgcaagctgagtgacatgtttctccaatatcagtacaatggcattgaggagggattgattttgtg |
29145078 |
T |
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| Q |
115 |
caagggcagaaatcacagcatgctgttgttgt |
146 |
Q |
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| T |
29145079 |
caagggcaggaatcacagcatgctgttgttgt |
29145110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 29153631 - 29153753
Alignment:
| Q |
163 |
tcaccattggaaagcagttgagtgatgaaggatgcccgatcgaaacgagcatcaaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaact |
262 |
Q |
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|||||||| || | || |||||| |||||||||| |||||||||||||||||| | ||||||||||||| ||| |||||||||| ||||||||||| |
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| T |
29153631 |
tcaccatttgagatcacttgagttatgaaggatgttgaatcgaaacgagcatcaacaacagttgaagtgaagcccaaaaggaaaaccagcaaagctaact |
29153730 |
T |
|
| Q |
263 |
tcatcatcattgccttcttgttc |
285 |
Q |
| |
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|||||| |||||||||||||||| |
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| T |
29153731 |
tcatcaccattgccttcttgttc |
29153753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 270
Target Start/End: Original strand, 29161816 - 29162036
Alignment:
| Q |
57 |
tgagtgacatttttctctaacatcagtacactg-acattgaggtgggattgatcttgtgcaagggcagaaatcacagcatgctgttgttgtggatttggt |
155 |
Q |
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||||| ||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||| || ||||||| ||||||||||||||||| |
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| T |
29161816 |
tgagttacatttttctctaacatcagtacaccacacatgcttgtgggaatgatcttgtgcattggcagctattacagcatcctgttgttgtggatttgac |
29161915 |
T |
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| Q |
156 |
att------agcttcaccattggaaagcagttgagtgatgaaggatgcccgatcgaaacgagcatcaaccatggttgaagtgaagctcaagaggaaaacc |
249 |
Q |
| |
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|| |||||||||||| || | | |||||| |||||||||| ||||||||||||||||||| | ||||||||||||| ||| || |||||| |
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| T |
29161916 |
atcgtaagcagcttcaccatttgagattacttgagttatgaaggatgttggatcgaaacgagcatcaacaacagttgaagtgaagcccaaaagaaaaacc |
29162015 |
T |
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| Q |
250 |
aacaaagctaacttcatcatc |
270 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
29162016 |
aataaagctaacttcatcatc |
29162036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 29145111 - 29145170
Alignment:
| Q |
210 |
agcatcaaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaacttcatcat |
269 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
29145111 |
agcatcaaccatggttgatgtgaagctcaagaggaaaaccaacaaagctaatttcatcat |
29145170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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