View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_29 (Length: 351)
Name: NF6563_low_29
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 39883360 - 39883045
Alignment:
| Q |
19 |
aaaatatgagcatgttcatgtccttccaaagaatccacaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgcacttcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
39883360 |
aaaatatgagcatgttcatgtccttccaaagagtccacaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccttgcacgtcaa |
39883261 |
T |
|
| Q |
119 |
gttccatttaatccaaacaaaaagttcgagaccaaagaacttactccaatgttcttctttaattaccctaggaccaaagctacttcgtatcttcacaatc |
218 |
Q |
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| T |
39883260 |
gttccatttaatccaaacaaaaagttcgagaccaaagaacttactccaatgttcttctttaattaccctaggaccaaagctacttcgtatcttcacaatc |
39883161 |
T |
|
| Q |
219 |
tcatgcatcacaagctttatgtttcattgatatagaccaatcacgatatattaacataaagcttgtagcagcttcaaactactttgaagttgaagaacgt |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39883160 |
tcatacatcacaagctttatgtttcattgatatagaccaatcacgatatattaacataaagcttgtagcagcttcaaactactttgaagttgaagaacgt |
39883061 |
T |
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| Q |
319 |
cctggtataaaactac |
334 |
Q |
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|||||||||||||||| |
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| T |
39883060 |
cctggtataaaactac |
39883045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 40645364 - 40645543
Alignment:
| Q |
39 |
tccttccaaagaatccacaccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgcacttcaagttccatttaatccaaacaa |
138 |
Q |
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| T |
40645364 |
tccttcgaaagatcccacaccatgactccaaagaaaatataccaatcccaag-taaattatcattctccttacacgttaagttccattcaatccaaacaa |
40645462 |
T |
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| Q |
139 |
aaagttcgagaccaaagaacttactccaatgttcttctttaattaccctaggaccaaagctacttcgtatcttcacaatctc |
220 |
Q |
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| T |
40645463 |
aaagatcgagcctggagaactaactccaatattcttcttttatgaccct-tgaccaaagctccttagtgtcctcacaatctc |
40645543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 36826512 - 36826426
Alignment:
| Q |
56 |
caccataactccaaaaaatatagaccaatctcaaggtatattaacaatttccatgcacttcaagttccatttaatccaaacaaaaag |
142 |
Q |
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| T |
36826512 |
caccataactccaaagaagatagaacaatctcaagttacattaccaatgtccttacacgtcaagttctattcaatccaagcaaaaag |
36826426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 24352016 - 24352080
Alignment:
| Q |
19 |
aaaatatgagcatgttcatgtccttccaaagaatccacaccataactccaaaaaatatagaccaa |
83 |
Q |
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||||||||| ||||||| | || ||| |||||| ||||||||||||| |||| || ||||||||| |
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| T |
24352016 |
aaaatatgaacatgttcctatcattctaaagaacccacaccataacttcaaagaagatagaccaa |
24352080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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