View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6563_low_32 (Length: 333)
Name: NF6563_low_32
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 31403456 - 31403153
Alignment:
| Q |
15 |
atataaaataaatgtaaaagcaaaaaatactttgatacttgagcgtaaaatatatgcagagattaagtaataaccagcagtaacactaaccgaaccttac |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31403456 |
atataaaatgaatgtaaaagcaaaaaatactttgatacttgagcgtaaaatatatgcagagattaagtaataaccagcagtaacactaaccgaaccttac |
31403357 |
T |
|
| Q |
115 |
aaactcattgactgaatcctaattaatcctctaacacaatcaacatcatctagcagaaacaactggttgagttgatcttcaatatcagatattgcataca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31403356 |
aaactcattgactgaatcctaattaatcctctaacacaatcaacatcatctagaagaaacaactggttgagttgatcttgaatatcagatattgcataca |
31403257 |
T |
|
| Q |
215 |
cgatatactcatcggcattttttccaacaacactgtgaaacattgaaatgaacttttcatatgctggaaacaaactgatttcaatggaaattattatttg |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31403256 |
cgatatactcattggcattttttccaacaacac--tgaaccattgaaatgaacttttcatatgctggaaacaaactgatttcaatggaaattattatttg |
31403159 |
T |
|
| Q |
315 |
tctcct |
320 |
Q |
| |
|
|||||| |
|
|
| T |
31403158 |
tctcct |
31403153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 31392808 - 31392724
Alignment:
| Q |
143 |
ctctaacacaatcaacatcatctagcagaaacaactggttgagttgatcttcaatatcagatattgcatacacgatatactcatc |
227 |
Q |
| |
|
|||||| |||||||||||| |||| | ||||||| ||||||||||||||| ||| ||| ||| |||||| |||||||||||| |
|
|
| T |
31392808 |
ctctaaaacaatcaacatcttctaacggaaacaagcggttgagttgatcttgaatgctagacattccatacatgatatactcatc |
31392724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University