View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6563_low_33 (Length: 328)
Name: NF6563_low_33
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 53985329 - 53985015
Alignment:
| Q |
1 |
aacgaagattcctgggagaattcaacccttgtcccgtttggcaagagcaactatttctggaggaaacctatatattaatctcttcttgctgtctgcatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53985329 |
aacgaagattcctgggagaattcaacccttgtcccatttggcaagagcaactatttctggaggtaacctatatattaatctcttcttgctgtctgcatgt |
53985230 |
T |
|
| Q |
101 |
acagattctgagttataaagtggtatgatattgtatatatgaattaaatcttaaaagttgttaggtgagattgggtttctaatgaaatatctttataata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53985229 |
acagattctgagttataaagtggtatgatattgtatatatgaattaaatcttaaaagttgttaggtgtgattgggtttctaatgaaatatctttataata |
53985130 |
T |
|
| Q |
201 |
cataaagatatggcacctccatctcccagtcccaatgttttacaatctaactcaaatggagctattcttctgcaaccataacgttagaagttgcggcagg |
300 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53985129 |
catacagatatggaacctccatctcccagtcccaatgttttacaatctaactcaaatggagctattcttctgcaaccataacgttagaagttggggcagg |
53985030 |
T |
|
| Q |
301 |
aagtggaagttgatg |
315 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
53985029 |
aagtggaagtggatg |
53985015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 53059802 - 53059842
Alignment:
| Q |
228 |
agtcccaatgttttacaatctaactcaaatggagctattct |
268 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
53059802 |
agtccccattttttacaatctaactcaaatggagctattct |
53059842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 53971418 - 53971350
Alignment:
| Q |
206 |
agatatggcacctccatctcccagtcccaatgttttacaatctaactcaaatggagctattcttctgca |
274 |
Q |
| |
|
||||||||| | || || |||||||||||| ||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
53971418 |
agatatggcccgtctatttcccagtcccaacttttcacaatctaaccaaaatggagctattcttctgca |
53971350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 37419108 - 37419147
Alignment:
| Q |
229 |
gtcccaatgttttacaatctaactcaaatggagctattct |
268 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
37419108 |
gtccccattttttacaatctaactcaaatggagctattct |
37419147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 31014384 - 31014424
Alignment:
| Q |
228 |
agtcccaatgttttacaatctaactcaaatggagctattct |
268 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
31014384 |
agtccccattttttacaatctaactcaaatggagctattct |
31014424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University