View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6563_low_35 (Length: 295)

Name: NF6563_low_35
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6563_low_35
NF6563_low_35
[»] chr3 (13 HSPs)
chr3 (2-277)||(6838632-6838910)
chr3 (1-277)||(8471581-8471860)
chr3 (15-124)||(8568692-8568801)
chr3 (15-137)||(5298894-5299016)
chr3 (52-118)||(6448563-6448629)
chr3 (53-118)||(6479764-6479829)
chr3 (54-118)||(6519945-6520009)
chr3 (47-134)||(5280847-5280934)
chr3 (52-118)||(8589911-8589977)
chr3 (53-118)||(6554220-6554285)
chr3 (53-118)||(6736172-6736237)
chr3 (1-90)||(8454864-8454953)
chr3 (54-138)||(6721852-6721936)
[»] chr7 (1 HSPs)
chr7 (15-127)||(6573042-6573154)
[»] scaffold0425 (1 HSPs)
scaffold0425 (53-118)||(7259-7324)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 277
Target Start/End: Original strand, 6838632 - 6838910
Alignment:
Q  2 caagaactatttacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagaagttactacttccttttaaccatggatcttcaacgagtaag 101  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  6838632 caagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagacgttactacttccttttaaccaaggatcttctacgagtaag 6838731  T
Q  102 attattgtgacaacacgcgacaaaaatgtagcatcaactgtgaaatctac---gataattgatttgaaacaactggagaagagtgacagttggagtttat 198  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||   | || |||||||||||||| |||||||||||||||||||||||||||    
T  6838732 attattgtgacaacacgcgataaaaatgtagcatcaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgacagttggagtttat 6838831  T
Q  199 tttccaaacttgcttttcacggcaaagatgcgagcgaatactcaaatcttgaatcaattggaaaaaatattgtagataa 277  Q
    |||||| ||||||||||||||||||| |||| ||||||||| |||| |||||||||||||| ||||| |||||||||||    
T  6838832 tttccacacttgcttttcacggcaaaaatgcaagcgaatacccaaaacttgaatcaattggcaaaaagattgtagataa 6838910  T

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Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 8471860 - 8471581
Alignment:
Q  1 gcaagaactatttacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagaagttactacttccttttaaccatggatcttcaacgagtaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  8471860 gcaagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagaagttactacttccctttaaccatggatcttctacgagtaa 8471761  T
Q  101 gattattgtgacaacacgcgacaaaaatgtagcatcaactgtgaaatctac---gataattgatttgaaacaactggagaagagtgacagttggagttta 197  Q
    ||||||||||||||||||||||||| | ||||||| || ||||||||||||   | || |||||||||||||| |||||||||||||| |||||||||||    
T  8471760 gattattgtgacaacacgcgacaaagaggtagcattaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgactgttggagttta 8471661  T
Q  198 ttttccaaacttgcttttcacggcaaagatgcgagcgaatactcaaatcttgaatcaattggaaaaaatattgtagataa 277  Q
    |||||||  ||||||||||  |||||| |   |||||||||| ||||||||||||||||||| |||||||||||||||||    
T  8471660 ttttccagtcttgcttttcctggcaaaaaattgagcgaatacccaaatcttgaatcaattggcaaaaatattgtagataa 8471581  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 8568692 - 8568801
Alignment:
Q  15 cttgttgtggatgatgtctggaaactgaatgaggaaagttgggagaagttactacttccttttaaccatggatcttcaacgagtaagattattgtgacaa 114  Q
    |||||| | |||||| |||||||   ||||||||||  ||||||| ||||||||||||| ||||| ||||||||||||   |||||||||||||||||||    
T  8568692 cttgttctagatgatatctggaatgggaatgaggaattttgggagcagttactacttccatttaatcatggatcttcaggaagtaagattattgtgacaa 8568791  T
Q  115 cacgcgacaa 124  Q
    |||| |||||    
T  8568792 cacgtgacaa 8568801  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 5299016 - 5298894
Alignment:
Q  15 cttgttgtggatgatgtctggaaactgaatgaggaaagttgggagaagttactacttccttttaaccatggatcttcaacgagtaagattattgtgacaa 114  Q
    |||||| ||||||||||||||||    | || |||| ||||||||   |||||||||||||||||| |||||||| |    ||||||||||||||||| |    
T  5299016 cttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacca 5298917  T
Q  115 cacgcgacaaaaatgtagcatca 137  Q
    |||| |||||  | |||||||||    
T  5298916 cacgtgacaaggaggtagcatca 5298894  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 6448563 - 6448629
Alignment:
Q  52 gttgggagaagttactacttccttttaaccatggatcttcaacgagtaagattattgtgacaacacg 118  Q
    |||||||| || |||| ||||| |||||||||||||||||    |||||||||||||||||||||||    
T  6448563 gttgggagcaggtactgcttccgtttaaccatggatcttctggaagtaagattattgtgacaacacg 6448629  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 6479764 - 6479829
Alignment:
Q  53 ttgggagaagttactacttccttttaaccatggatcttcaacgagtaagattattgtgacaacacg 118  Q
    ||||||| ||||||||||||| ||||||||||||||||     ||||||||||| |||||||||||    
T  6479764 ttgggagcagttactacttccatttaaccatggatcttttggaagtaagattatcgtgacaacacg 6479829  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 6519945 - 6520009
Alignment:
Q  54 tgggagaagttactacttccttttaaccatggatcttcaacgagtaagattattgtgacaacacg 118  Q
    ||||| ||||||||||||||  ||||||||||||||||    ||||||||||| |||||||||||    
T  6519945 tgggataagttactacttccgcttaaccatggatcttctggaagtaagattatcgtgacaacacg 6520009  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 5280934 - 5280847
Alignment:
Q  47 ggaaagttgggagaagttactacttccttttaaccatggatcttcaacgagtaagattattgtgacaacacgcgacaaaaatgtagca 134  Q
    |||| |||||||  ||||||||||||| ||||| ||||||||||     ||||||||||||||||| ||||| |||||| | ||||||    
T  5280934 ggaatgttgggaacagttactacttccctttaatcatggatcttttggaagtaagattattgtgaccacacgtgacaaagaggtagca 5280847  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 8589977 - 8589911
Alignment:
Q  52 gttgggagaagttactacttccttttaaccatggatcttcaacgagtaagattattgtgacaacacg 118  Q
    |||||||| ||||||||||||| ||||||||||||| |||    ||||||||| | |||||||||||    
T  8589977 gttgggagcagttactacttccctttaaccatggattttctggaagtaagattgtcgtgacaacacg 8589911  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 6554220 - 6554285
Alignment:
Q  53 ttgggagaagttactacttccttttaaccatggatcttcaacgagtaagattattgtgacaacacg 118  Q
    ||||||| || |||||||||| |||||||||||||||||    |||| |||||| |||||||||||    
T  6554220 ttgggagcagctactacttccgtttaaccatggatcttctggaagtatgattatcgtgacaacacg 6554285  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 6736237 - 6736172
Alignment:
Q  53 ttgggagaagttactacttccttttaaccatggatcttcaacgagtaagattattgtgacaacacg 118  Q
    ||||||| || |||||||||| |||||||||||||||||    ||||| ||||| |||||||||||    
T  6736237 ttgggagcagctactacttccgtttaaccatggatcttctggaagtaaaattatcgtgacaacacg 6736172  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8454953 - 8454864
Alignment:
Q  1 gcaagaactatttacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagaagttactacttccttttaaccatggatctt 90  Q
    ||||||| ||||| |||||| | || ||| |||||||   | ||| |||| ||||||||  |||||||||||| ||||||||||||||||    
T  8454953 gcaagaaatatttgcttgttttagacgatatctggaacggggatgcggaacgttgggagttgttactacttccctttaaccatggatctt 8454864  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 6721852 - 6721936
Alignment:
Q  54 tgggagaagttactacttccttttaaccatggatcttcaacgagtaagattattgtgacaacacgcgacaaaaatgtagcatcaa 138  Q
    |||||| |||||||||||| ||||||   ||||||||||   |||||||| || ||||||||||| |||||  | ||||||||||    
T  6721852 tgggagcagttactacttctttttaaatgtggatcttcaggaagtaagatgatcgtgacaacacgggacaaggaagtagcatcaa 6721936  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 6573042 - 6573154
Alignment:
Q  15 cttgttgtggatgatgtctggaaactgaatgaggaaagttgggagaagttactacttccttttaaccatggatcttcaacgagtaagattattgtgacaa 114  Q
    |||||| | |||||||| ||||||  |||||||||  ||| |||| | ||||||||| |||| |||||||||| || |   || ||||||||||||||||    
T  6573042 cttgttctagatgatgtgtggaaagggaatgaggagtgtttggagcaattactactttctttcaaccatggatttttaggaagcaagattattgtgacaa 6573141  T
Q  115 cacgcgacaaaaa 127  Q
    |||| ||||||||    
T  6573142 cacgtgacaaaaa 6573154  T

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Target: scaffold0425 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 7259 - 7324
Alignment:
Q  53 ttgggagaagttactacttccttttaaccatggatcttcaacgagtaagattattgtgacaacacg 118  Q
    ||||||| || |||||||||| |||||||||||||||||    ||||| ||||| |||||||||||    
T  7259 ttgggagcagctactacttccgtttaaccatggatcttctggaagtaaaattatcgtgacaacacg 7324  T

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