View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_38 (Length: 283)
Name: NF6563_low_38
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 34698022 - 34698289
Alignment:
| Q |
1 |
actttaacaccgtcaatgcccaccgattccaaatgagagtgaagcccttcaaacatttcttgggctaaatttggtggcactaagcctacaccattgttaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34698022 |
actttaacaccgtcaatgcccaccgattccaaatgagagtgaagcccttcaaacatttcttgggctaaatttggtggcactaaccctacaccattgttaa |
34698121 |
T |
|
| Q |
101 |
caatcttatccaccgctaaatcctccattgtcatcttcagccccggagacagcttcggagtaacaaccttagcttcgggcatgcccttcactttaggtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34698122 |
caatcttatccaccgctaaatcctccattgtcatcttcagccccggagacagcttcggagtaacaaccttagcttcgggcatgcccttcactttaggtct |
34698221 |
T |
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| Q |
201 |
aaccccaccccaatacccacaaagtgcatgccaaacataaacattctcaacactcttaaactcttcct |
268 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34698222 |
aaccccaccccaatacccacaaagtgcatgccaaacataaacattctcaacactcttaaactcttcct |
34698289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 43563873 - 43563921
Alignment:
| Q |
196 |
ggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacat |
244 |
Q |
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| T |
43563873 |
ggtctcacaccaccccaataaccacaaagtgcatgccaaacataaacat |
43563921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 36431851 - 36431900
Alignment:
| Q |
195 |
aggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacat |
244 |
Q |
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|||||| || ||||||||| |||||||||||||||||||||||||||| |
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| T |
36431851 |
aggtctcacaccaccccaagcaccacaaagtgcatgccaaacataaacat |
36431900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 43639547 - 43639596
Alignment:
| Q |
193 |
ttaggtctaaccccaccccaatacccacaaagtgcatgccaaacataaac |
242 |
Q |
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||||| |||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
43639547 |
ttaggcctaatcccaccccaatacccacaaaaagcatgccacacataaac |
43639596 |
T |
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