View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_39 (Length: 277)
Name: NF6563_low_39
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 52604717 - 52604981
Alignment:
| Q |
11 |
tatattacattacatactcctatattacttaatggaagagaaaacatgtt-gtccatgtccattccatgatgtcttgtttgttgaaaaacgttgatgact |
109 |
Q |
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| T |
52604717 |
tatattacattacatactcctatattacttaatggaagagaaaacatgtttgtccatgtccattccatgatgtcttgtttgttgaaaaacgttgatgact |
52604816 |
T |
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| Q |
110 |
ttactacctgttgtgtagtggatttggacctgtaggaacaacccttttgtcctctgatgatgacgtgttgttgtagcaagaagacaagtgttttcttttg |
209 |
Q |
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| T |
52604817 |
ttactacctgttgtgtagtggatttggacctgtaggaacgacccttttgtcctctgatgatgacgtgttgttgtagcaagaagacaagtgttttcttttg |
52604916 |
T |
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| Q |
210 |
tggttgcacttgtgaacatcatcatcaagtactgccacactactactgttcttcttctctgctcc |
274 |
Q |
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| T |
52604917 |
tggttgcatttgtgaacatcatcatcaagtactgccacactgctactgttcttcttctttgctcc |
52604981 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 16905712 - 16905748
Alignment:
| Q |
113 |
ctacctgttgtgtagtggatttggacctgtaggaaca |
149 |
Q |
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| T |
16905712 |
ctacctgttatgtaatggatttggacctgtaggaaca |
16905748 |
T |
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