View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6563_low_41 (Length: 270)
Name: NF6563_low_41
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_41 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0083 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 54630 - 54372
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||| | | || |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54630 |
agacagcctccctgaatctcttaaggaactgtacatcgatggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcac |
54531 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaa |
200 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54530 |
atccctgtcatatcaataaattacaaagtcacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaa |
54436 |
T |
|
| Q |
201 |
taatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54435 |
taatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac |
54372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 9980507 - 9980765
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||| | | || |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9980507 |
agacagcctccctgaatctcttaaggaactgtacatcgatggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcac |
9980606 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaa |
200 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9980607 |
atccctgtcatatcaataaattacaaagtcacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaa |
9980701 |
T |
|
| Q |
201 |
taatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9980702 |
taatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac |
9980765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 10035044 - 10035302
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
|||||||||| |||||||||||| | |||| ||||| | || |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10035044 |
agacagcctcactgactctcttagggaactctgcatttggaattgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcac |
10035143 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaa |
200 |
Q |
| |
|
|||||| ||||| |||||||| | ||||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10035144 |
atccctttcatagatataaatcatgaagtcacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaa |
10035238 |
T |
|
| Q |
201 |
taatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10035239 |
taatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac |
10035302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 47 - 264
Target Start/End: Original strand, 10263788 - 10264000
Alignment:
| Q |
47 |
ccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaac |
146 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| ||||| |||||||| ||||||||||||| || ||| | |
|
|
| T |
10263788 |
ccattgttagaagaaaggtataaaaggaaggaacattagtccaaaattgctcacatccctttcataagaataaatgatgaagtcacaatatgat-aga-c |
10263885 |
T |
|
| Q |
147 |
aagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatc |
246 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10263886 |
aagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatc |
10263982 |
T |
|
| Q |
247 |
tcatgggtcctatgctac |
264 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
10263983 |
tcatgggtcctctgctac |
10264000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 9852918 - 9853128
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
|||||||||||||||||| || ||| ||| | ||||| | ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9852918 |
agacagcctccctgactcactgaagagactggacatttatggatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcac |
9853017 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaa |
200 |
Q |
| |
|
|||||||||||| | ||||||||| | || ||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9853018 |
atccctgtcatagaaataaatgaccaggttacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaa |
9853112 |
T |
|
| Q |
201 |
taatcaatcatctgta |
216 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
9853113 |
taatcaatcctctgta |
9853128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 10129963 - 10130214
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||| ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
10129963 |
agacagcctccctgattctcttatgcaactgtgcattcaaggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcac |
10130062 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaa |
200 |
Q |
| |
|
|||||| ||| | |||| || || |||||||| || ||| ||||||||||||| ||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
10130063 |
atccctttcaaaaatatcaa------aggcacaatatgat-aga-caagttgtgttcccatttcaggtatgctcct-agttcctaccagaaa---gccaa |
10130150 |
T |
|
| Q |
201 |
taatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac |
264 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10130151 |
taatcaatcctctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac |
10130214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 10520526 - 10520736
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
||||||||||||||||||||| ||| ||| |||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10520526 |
agacagcctccctgactctctgaagagactgctcatttgggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcac |
10520625 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaa |
200 |
Q |
| |
|
||||| ||||||| |||||| || |||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10520626 |
atcccagtcatatcaataaattaccaagtcacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaa |
10520720 |
T |
|
| Q |
201 |
taatcaatcatctgta |
216 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
10520721 |
taatcaatcctctgta |
10520736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 9841899 - 9842109
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||| ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
9841899 |
agacagcctccctgactctcttgagcgtctgaacatttggggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcac |
9841998 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaa |
200 |
Q |
| |
|
||||||||||||| ||||| || |||||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9841999 |
atccctgtcatatggataaaccaccaagtcagaatatgat-ag-acaagttgtgttcccgtttcaggtatgttccacagttcctaccagaaa---gccaa |
9842093 |
T |
|
| Q |
201 |
taatcaatcatctgta |
216 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
9842094 |
taatcaatcctctgta |
9842109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 47 - 208
Target Start/End: Original strand, 10583669 - 10583829
Alignment:
| Q |
47 |
ccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaac |
146 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||||||||||| | |||||| || |||||||||||| || || || |
|
|
| T |
10583669 |
ccattgttagaagaaaggtataaaaggaatgaatattggtccaaaattgctcacatccctgtcatacaaataaatcacaaagtcacaatatgat-ag-ac |
10583766 |
T |
|
| Q |
147 |
aagttgtgttccag-tttcaggtatgttccacagttcctaccagaaaactgccaataatcaat |
208 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10583767 |
aagttgtgttcccgttttcaggtatgttccacatttcctaccagaaaactgccaataatcaat |
10583829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 10431069 - 10430898
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10431069 |
agacagcctccctgactctcttaagcaactgagaattagggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcac |
10430970 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgtt |
173 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| || || |||||||||||||||| ||||||||||||| |
|
|
| T |
10430969 |
atccctgtcatagatataaatgatgaagtcacaatatgat-ag-acaagttgtgttccagttttcaggtatgtt |
10430898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 10666576 - 10666742
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10666576 |
agacagcctccctgactctcttaaggaactgcacattgaggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcac |
10666675 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggta |
169 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||| || || || ||||||||||| |||||||||| |
|
|
| T |
10666676 |
atccctgtcatatcaataaattacaaagtcacaatatgat-ag-acgagttgtgttcctgtttcaggta |
10666742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 11772275 - 11772429
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| |||| |||||||||| |||||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
11772275 |
agacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcgctcac |
11772374 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttcc |
158 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
11772375 |
atccctgtcatagatataaatgaaaaagtcacaat---atgagaacaagctgtgttcc |
11772429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 11779010 - 11778856
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| |||| |||||||||| |||||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
11779010 |
agacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcgctcac |
11778911 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttcc |
158 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
11778910 |
atccctgtcatagaaataaatgaaaaagtcacaat---atgagaacaagctgtgttcc |
11778856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 10360829 - 10360658
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||| | | || |||||||||| |||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
10360829 |
agacagcctccctgactctcttaaggaactggacatctatgattgcccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcac |
10360730 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgtt |
173 |
Q |
| |
|
||||| |||||| | ||||| ||| |||||||||||| || || |||||||||||||| | ||||||||||||| |
|
|
| T |
10360729 |
atccccgtcataaaaataaacgaccaagtcacaatatgat-ag-acaagttgtgttcccgttttcaggtatgtt |
10360658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 10372939 - 10372768
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
||||||||||||| |||||| ||| ||| |||||| | |||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10372939 |
agacagcctcccttcctctctgaagagactggtcattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcac |
10372840 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgtt |
173 |
Q |
| |
|
||||| |||||| | ||||| ||| || ||||||||| || || |||||||||||||| | ||||||||||||| |
|
|
| T |
10372839 |
atccccgtcataaaaataaacgaccaaatcacaatatgat-ag-acaagttgtgttcccgttttcaggtatgtt |
10372768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 10430786 - 10430718
Alignment:
| Q |
196 |
gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10430786 |
gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac |
10430718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 10503692 - 10503857
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
||||||||| ||||| |||||||||| ||| ||||| ||||| ||| |||| |||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
10503692 |
agacagccttcctgattctcttaagctactgatcattcaaagatgcccaacattagaagaaaggtataaaaggaaggaacattggtccaaaatttctcac |
10503791 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggta |
169 |
Q |
| |
|
|||||||||||| | ||| ||| |||||||||| ||||| ||| | |||||||| |||||||||| |
|
|
| T |
10503792 |
atccctgtcatagaaatagatggacaagtcacaat---atgaggacaggctgtgttcccgtttcaggta |
10503857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 10092077 - 10092146
Alignment:
| Q |
42 |
gatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat |
111 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
10092077 |
gatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat |
10092146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 10198959 - 10199028
Alignment:
| Q |
42 |
gatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat |
111 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
10198959 |
gatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat |
10199028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 10531868 - 10531989
Alignment:
| Q |
47 |
ccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaac |
146 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||| | |||| ||||| |||| || |
|
|
| T |
10531868 |
ccattgttagaagaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcataataataaacaagcaagttacaat---atgaagac |
10531964 |
T |
|
| Q |
147 |
aagttgtgttccagtttcaggtatg |
171 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
10531965 |
aagttgtgttcccgtttcaggtatg |
10531989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 10086273 - 10086352
Alignment:
| Q |
58 |
agaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat |
137 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| |||| ||||||||| |
|
|
| T |
10086273 |
agaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatat |
10086352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 10193193 - 10193272
Alignment:
| Q |
58 |
agaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat |
137 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| |||| ||||||||| |
|
|
| T |
10193193 |
agaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatat |
10193272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 10680666 - 10680731
Alignment:
| Q |
47 |
ccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcata |
112 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
10680666 |
ccattgttagaagaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcata |
10680731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 8585578 - 8585531
Alignment:
| Q |
75 |
aggaacagtggtccaaaattgctcacatccctgtcatatatataaatg |
122 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
8585578 |
aggaacattggtccaacattgctcacatacctgtcataaatataaatg |
8585531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 17849951 - 17849815
Alignment:
| Q |
1 |
agacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcac |
100 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||||| |||| || | |||| |||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
17849951 |
agacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcac |
17849852 |
T |
|
| Q |
101 |
atccctgtcatatatataaatgacgaagtcacaatat |
137 |
Q |
| |
|
|||||||||||| | || | ||| |||||||||||| |
|
|
| T |
17849851 |
atccctgtcatagaaattgaggaccaagtcacaatat |
17849815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 26909975 - 26910049
Alignment:
| Q |
47 |
ccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaat |
121 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
26909975 |
ccattgttagaagaaaggtacaaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaat |
26910049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 44954631 - 44954552
Alignment:
| Q |
58 |
agaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat |
137 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||| | || | ||||||| | ||| ||| | |||||||||||| |
|
|
| T |
44954631 |
agaaaggtatagaaggaaggaacattggtccaaaattgctaaaattcatgtcatagaaatagatggccaagtcacaatat |
44954552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University