View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_42 (Length: 269)
Name: NF6563_low_42
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 27424311 - 27424212
Alignment:
| Q |
88 |
gtgaacagcttgttaattttgtaatattatatacaatgtctaacatagactcaaaattatgttaggtgcttcctcaattatacaatgacgacctaactca |
187 |
Q |
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| T |
27424311 |
gtgaacagcttgttaattttgtaatattatatacaatgtctaacatagactcaaaattatgttaggtgcttcctcaattatacaatgacgacctaactca |
27424212 |
T |
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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 27424393 - 27424340
Alignment:
| Q |
8 |
agataattctaatataatcacaattggatggcatgtgagtataaatttatgtaa |
61 |
Q |
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| T |
27424393 |
agataattctaatataatcacaattggatggcatgtgagtataaatttatgtaa |
27424340 |
T |
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