View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_44 (Length: 256)
Name: NF6563_low_44
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 27424109 - 27423879
Alignment:
| Q |
1 |
cagaatgattctttcaagaagacgggatgctacaatttagattgttcaggttttgttcaagccgataatacaattactccaggtcaatcattcatcaaaa |
100 |
Q |
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| T |
27424109 |
cagaatgattctttcaagaagacgggatgctacaatttagattgttcaggttttgttcaagccgataatacaattactccaggtcaatcattcaacaaaa |
27424010 |
T |
|
| Q |
101 |
catccttccttaatggacttgttatcaatcttccactttctatcttccaggtaattttcatattattggtatttcttttttaattttcttgacaaaaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27424009 |
catccttccttaatggacttgttatcaatcttccactttctatcttccaggtaattttcatattattggtatttcttttataattttcttgacaaaaaac |
27423910 |
T |
|
| Q |
201 |
aattggtattctcataaaagttgatcaatgt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27423909 |
aattggtattctcataaaagttgatcaatgt |
27423879 |
T |
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