View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6563_low_45 (Length: 254)

Name: NF6563_low_45
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6563_low_45
NF6563_low_45
[»] chr8 (14 HSPs)
chr8 (13-254)||(5886146-5886387)
chr8 (13-254)||(5841827-5842065)
chr8 (13-254)||(5848537-5848775)
chr8 (33-144)||(5920367-5920478)
chr8 (13-87)||(5847981-5848055)
chr8 (33-193)||(5983554-5983711)
chr8 (56-193)||(5947976-5948110)
chr8 (48-193)||(5959051-5959193)
chr8 (215-253)||(5958774-5958812)
chr8 (215-253)||(5983316-5983354)
chr8 (215-253)||(5947706-5947744)
chr8 (191-254)||(5841585-5841645)
chr8 (191-254)||(5847739-5847799)
chr8 (191-254)||(5848295-5848355)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 5886146 - 5886387
Alignment:
Q  13 tcatcaggaaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886146 tcatcaggaaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaa 5886245  T
Q  113 aatttccttgtagatttagagatgaggttggaaggtaaaattgatcttgatgatgatgatgataggagtttaggatcacatgttccttggaatcagatga 212  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5886246 aatttccttgtagatttagagatgaggttggaaggtaaaactgatcttgatgatgatgatgataggagtttaggatcacatgttccttggaatcagatga 5886345  T
Q  213 ataatctaggatgctacaagcataatcctcaaggctttgatc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5886346 ataatctaggatgctacaagcataatcctcaaggctttgatc 5886387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 5841827 - 5842065
Alignment:
Q  13 tcatcaggaaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaa 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5841827 tcatcagggaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacatttgtatcaatttggtaaa 5841926  T
Q  113 aatttccttgtagatttagagatgaggttggaaggtaaaattgatcttgatgatgatgatgataggagtttaggatcacatgttccttggaatcagatga 212  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||||   ||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  5841927 aatttccttgtagatttggagatgaggttggaaggtagaactgatct---tgatgatgatgattggagtttaggatcatttgttccttggaatcagatga 5842023  T
Q  213 ataatctaggatgctacaagcataatcctcaaggctttgatc 254  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  5842024 ataatctaggatgctacatgcataattttcaaggctttgatc 5842065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 5848537 - 5848775
Alignment:
Q  13 tcatcaggaaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaa 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5848537 tcatcagggaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacatttgtatcaatttggtaaa 5848636  T
Q  113 aatttccttgtagatttagagatgaggttggaaggtaaaattgatcttgatgatgatgatgataggagtttaggatcacatgttccttggaatcagatga 212  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||||   ||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  5848637 aatttccttgtagatttggagatgaggttggaaggtagaactgatct---tgatgatgatgattggagtttaggatcatttgttccttggaatcagatga 5848733  T
Q  213 ataatctaggatgctacaagcataatcctcaaggctttgatc 254  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  5848734 ataatctaggatgctacatgcataattttcaaggctttgatc 5848775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 5920367 - 5920478
Alignment:
Q  33 tggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttaga 132  Q
    ||||||| |||| | ||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||    
T  5920367 tggtattggattttgaatgtgaaggaaattgccattataatggttattgatcatgtctacctttgtatcaatttggtgaaaattaccttgtagatttgga 5920466  T
Q  133 gatgaggttgga 144  Q
    ||||||||||||    
T  5920467 gatgaggttgga 5920478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 5847981 - 5848055
Alignment:
Q  13 tcatcaggaaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatg 87  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5847981 tcatcagggaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatg 5848055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 5983554 - 5983711
Alignment:
Q  33 tggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttaga 132  Q
    ||||||| |||| | ||||| | ||||||||| ||||||||||| ||||||   ||||||||||||||||||||| | |||||| |||||||||||| ||    
T  5983554 tggtattggattttgaatgtgagggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtagatttgga 5983650  T
Q  133 gatgaggttggaaggtaaaattgatcttgatgatgatgatgataggagtttaggatcacat 193  Q
    |||||||||| | |||| |  | ||||||||| | || ||||| | |||| ||||||||||    
T  5983651 gatgaggttgaatggtataggtaatcttgatggttataatgattgaagttgaggatcacat 5983711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 193
Target Start/End: Original strand, 5947976 - 5948110
Alignment:
Q  56 ggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaaggtaaaattg 155  Q
    ||||||||| ||||||||||| ||||||   ||||||||||||||||||||| | |||||| |||||||||||| |||||||||||| | |||| |  |     
T  5947976 ggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgaggttgaatggtataggta 5948072  T
Q  156 atcttgatgatgatgatgataggagtttaggatcacat 193  Q
    ||||||||| | || ||||| | |||| ||||||||||    
T  5948073 atcttgatggttataatgattgaagttgaggatcacat 5948110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 5959051 - 5959193
Alignment:
Q  48 aatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttggaagg 147  Q
    ||||| ||||||||||| ||||||||||| ||||||   ||||||||||||||||||||| | |||||| | |||  ||||| |||||||||||| | ||    
T  5959051 aatgtgaaggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattactttgctgatttggagatgaggttgaatgg 5959147  T
Q  148 taaaattgatcttgatgatgatgatgataggagtttaggatcacat 193  Q
    || |  | ||||||||| |||||||||| | |||| ||| ||||||    
T  5959148 tataggtaatcttgatggtgatgatgattgaagttgagggtcacat 5959193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 5958774 - 5958812
Alignment:
Q  215 aatctaggatgctacaagcataatcctcaaggctttgat 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5958774 aatctaggatgctacaagcataatcctcaaggctttgat 5958812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 5983316 - 5983354
Alignment:
Q  215 aatctaggatgctacaagcataatcctcaaggctttgat 253  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  5983316 aatctaggatgttacaagcataatcctcaaggctttgat 5983354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 5947706 - 5947744
Alignment:
Q  215 aatctaggatgctacaagcataatcctcaaggctttgat 253  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  5947706 aatctaggatgctagaagcgtaatcctcaaggctttgat 5947744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 5841585 - 5841645
Alignment:
Q  191 catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatc 254  Q
    ||||||||||||||||| ||||||   ||||||||| |||| |||  |||||||||||||||||    
T  5841585 catgttccttggaatcaaatgaat---ctaggatgcaacaatcatggtcctcaaggctttgatc 5841645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 5847739 - 5847799
Alignment:
Q  191 catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatc 254  Q
    ||||||||||||||||| ||||||   ||||||||| |||| |||  |||||||||||||||||    
T  5847739 catgttccttggaatcaaatgaat---ctaggatgcaacaatcatggtcctcaaggctttgatc 5847799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 5848295 - 5848355
Alignment:
Q  191 catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatc 254  Q
    ||||||||||||||||| ||||||   ||||||||| |||| |||  |||||||||||||||||    
T  5848295 catgttccttggaatcaaatgaat---ctaggatgcaacaatcatggtcctcaaggctttgatc 5848355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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