View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_50 (Length: 223)
Name: NF6563_low_50
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 31942327 - 31942516
Alignment:
| Q |
20 |
aacaaaatgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttac |
119 |
Q |
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| T |
31942327 |
aacaaaatgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttac |
31942426 |
T |
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| Q |
120 |
ctcttcctgtttctgctcctatgacaaacaataatattgaaccattcaatcaaactttacttcctttaaccaacagcaccaataatgatgatgatg |
215 |
Q |
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| T |
31942427 |
ctc------tttctgttcctatgacaaacaataatattgaaccattcaatcaaagtttacttccttttaccaacagcaccaataatgatgatgatg |
31942516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 32001286 - 32001475
Alignment:
| Q |
20 |
aacaaaatgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32001286 |
aacaaaatgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctttac |
32001385 |
T |
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| Q |
120 |
ctcttcctgtttctgctcctatgacaaacaataatattgaaccattcaatcaaactttacttcctttaaccaacagcaccaataatgatgatgatg |
215 |
Q |
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| T |
32001386 |
ctc------tttctgttcctatgacaaacaataatattgaaccattcaatcaaagtttacttcctttgaccaacagcaccaataatgatgatgatg |
32001475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 32004122 - 32004236
Alignment:
| Q |
20 |
aacaaaatgcatagtatgtatgctatgatgttatccaatgatga---tcttgaatctccaacatccactttgaactttcctggaacaaccttgcttcctt |
116 |
Q |
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||||||||||||| ||||||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||| || ||||||||| |||||||| |
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| T |
32004122 |
aacaaaatgcataccatgtatgttatgatgtcatccaatgatgaaaatcttgaatctcctacatccactttgaacttcccgggaacaaccctgcttcctc |
32004221 |
T |
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| Q |
117 |
tacctcttcctgttt |
131 |
Q |
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| T |
32004222 |
ttcctcttcctgttt |
32004236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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