View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6563_low_51 (Length: 223)

Name: NF6563_low_51
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6563_low_51
NF6563_low_51
[»] chr3 (22 HSPs)
chr3 (19-213)||(10034613-10034807)
chr3 (19-213)||(9841468-9841662)
chr3 (19-213)||(10263311-10263505)
chr3 (19-213)||(10666076-10666270)
chr3 (19-186)||(10520095-10520262)
chr3 (19-213)||(10431306-10431500)
chr3 (19-213)||(10129532-10129726)
chr3 (19-168)||(10373152-10373301)
chr3 (19-186)||(10361093-10361260)
chr3 (68-213)||(9980125-9980270)
chr3 (19-213)||(9852349-9852543)
chr3 (21-168)||(10531273-10531420)
chr3 (21-117)||(13852822-13852918)
chr3 (73-168)||(11771898-11771993)
chr3 (73-168)||(11779292-11779387)
chr3 (67-139)||(10503240-10503312)
chr3 (21-117)||(10680072-10680167)
chr3 (69-111)||(10091457-10091499)
chr3 (69-111)||(10198339-10198381)
chr3 (19-117)||(10583123-10583221)
chr3 (61-98)||(10085907-10085944)
chr3 (61-98)||(10192827-10192864)
[»] scaffold0083 (1 HSPs)
scaffold0083 (68-213)||(54867-55012)
[»] chr2 (1 HSPs)
chr2 (21-168)||(26909500-26909647)
[»] chr8 (2 HSPs)
chr8 (21-117)||(11487641-11487737)
chr8 (71-113)||(44955024-44955066)
[»] chr4 (1 HSPs)
chr4 (66-117)||(17850287-17850338)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 10034613 - 10034807
Alignment:
Q  19 aagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10034613 aagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatta 10034712  T
Q  119 cgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgat 213  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||  ||||||||||||||||||    
T  10034713 cgatttcatcccaaagaacaaagccatctgtaacggaatggggtctccaatatttgacagcactttccaacttgagtattgaaaagggtgatgat 10034807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 9841468 - 9841662
Alignment:
Q  19 aagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatta 118  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9841468 aagatggacatgctcacagctcttgaaatgttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattg 9841567  T
Q  119 cgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgat 213  Q
    | |||||  |||||| ||||  |||  | || ||||||||||||| |||||||||||| ||||||||||  |||  |||||| ||||||||||||    
T  9841568 ctatttctacccaaaaaacagcaccgccggttacggaatggggtcaccaatatttgacggcactttcctacttgcgaattgataagggtgatgat 9841662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 10263311 - 10263505
Alignment:
Q  19 aagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatta 118  Q
    |||||||| |||||||| |||||||||||||||  ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  10263311 aagatggaaatgctcaccgctcttgaaaggttgtttctaacatgtgcagagttgtcattttctgaaggagtttgtctacctcccaaattacaatcaattg 10263410  T
Q  119 cgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgat 213  Q
     ||||||  |||||| ||||| |||  | || |||||||||||||||||||||||||||||||||||||  ||||| ||| ||||||||||||||    
T  10263411 agatttctacccaaaaaacaacaccgccggttacggaatggggtctccaatatttgacagcactttcctacttgactattcaaaagggtgatgat 10263505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 10666076 - 10666270
Alignment:
Q  19 aagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatta 118  Q
    ||||||||||||||||| |||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||     
T  10666076 aagatggacatgctcactgctcttgaaaagttgattctaagatgtgcacagttgtcattttgtgaaggagtttgtctacctcccaaattacaaacaattg 10666175  T
Q  119 cgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgat 213  Q
     ||||||||| ||||||| ||  ||  | || |||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||    
T  10666176 tgatttcatctcaaagaataactccgccggttacggaatggggtctccaatatttgacagcactttcctacttgagtattgaaaagggtgatgat 10666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 10520095 - 10520262
Alignment:
Q  19 aagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatta 118  Q
    |||||||||||||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10520095 aagatggacatgctcacagctcttgaaaggttgactctagattgtgtagagttgtcattttgtgaaggagtttgtctacctcccaaattgcaatcaatta 10520194  T
Q  119 cgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttcc 186  Q
     ||||||  |||||| ||||  |||  | || ||||||||||||||||||||||||||||||||||||    
T  10520195 agatttctacccaaaaaacagcaccgccggttacggaatggggtctccaatatttgacagcactttcc 10520262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 10431500 - 10431306
Alignment:
Q  19 aagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatta 118  Q
    ||||||||||||||||| |||||||||| |||| || | ||||||  | || |||||||||||||||||||||||||||||||||||||||||||||||     
T  10431500 aagatggacatgctcaccgctcttgaaaagttgcatatgaaatgtcaaaagctgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattt 10431401  T
Q  119 cgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgat 213  Q
     | ||||||| | ||||| ||  ||  | || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10431400 ggttttcatctcgaagaataactccgccggttacggaatggggtctccaatatttgacagcactttccttattgacaattcaaaagggtgatgat 10431306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 10129532 - 10129726
Alignment:
Q  19 aagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatta 118  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10129532 aagattgacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattg 10129631  T
Q  119 cgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgat 213  Q
     |||    ||| ||||||||  |||  |||| || ||||||||||| ||| ||||||| || |||||   |||||  |||| |||||||||||||    
T  10129632 agatacagtccaaaagaacagcaccgcctgtgacagaatggggtcttcaagatttgaccgctctttcaagattgagtattggaaagggtgatgat 10129726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 10373301 - 10373152
Alignment:
Q  19 aagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatta 118  Q
    ||||||||||||||||| |||||||||||||||| | |   ||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  10373301 aagatggacatgctcaccgctcttgaaaggttgagtttgggatgtcgagagttgtcattttgtgaaggagtttgtctacctctcaaattacaatcaattt 10373202  T
Q  119 cgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaa 168  Q
     ||||||||| | ||||| || |||  | || ||||||||||||||||||    
T  10373201 ggatttcatctcgaagaataacaccgccggttacggaatggggtctccaa 10373152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 10361260 - 10361093
Alignment:
Q  19 aagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatta 118  Q
    |||||||||| |||  | ||||||||| |||||| |||| | ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10361260 aagatggacacgcttgccgctcttgaacggttgactctagattggccagagttgtcgttttgtgaaggagtttgtctacctcccaaattacaatcaatta 10361161  T
Q  119 cgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttcc 186  Q
     |||    ||| ||||||||  ||   |||| || |||||||||||||||||||||||||||||||||    
T  10361160 tgatacagtccaaaagaacagcactgcctgtgacagaatggggtctccaatatttgacagcactttcc 10361093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 9980125 - 9980270
Alignment:
Q  68 agttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctcca 167  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||  ||||||  || ||| ||||  |||  | || |||||||||||||||||    
T  9980125 agttgtcattttctgaaggagtttgtctacctctcaaattacaatcaattgtgatttctaccaaaaaaacagcaccgccggttacggaatggggtctcca 9980224  T
Q  168 atatttgacagcactttccttattgacaattgaaaagggtgatgat 213  Q
    ||||||||||||||||| |   |||| ||||| |||||||||||||    
T  9980225 atatttgacagcacttttcgacttgagaattgtaaagggtgatgat 9980270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 9852349 - 9852543
Alignment:
Q  19 aagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatta 118  Q
    ||||||||||||||||| |||||||||   ||| || | |||||   | |||||||||||| ||||||||||||||||||||||||||||  | |||||     
T  9852349 aagatggacatgctcaccgctcttgaagatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctcccaaattaagaacaattg 9852448  T
Q  119 cgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaatatttgacagcactttccttattgacaattgaaaagggtgatgat 213  Q
     ||||||  || ||| ||||  |||  | || ||||||||||||||||||||||||||||| ||||| | ||||   |||| |||||||||||||    
T  9852449 tgatttctaccaaaaaaacagcaccgccggttacggaatggggtctccaatatttgacagctctttcatcattgtggattgtaaagggtgatgat 9852543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 10531273 - 10531420
Alignment:
Q  21 gatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacg 120  Q
    |||||||| |||||| |||||||||   |||| |||| | ||| | ||||||| ||||||||||||| |||||||||||||||||||||||||||||  |    
T  10531273 gatggacacgctcactgctcttgaacaattgactctagattgtcccgagttgttattttgtgaaggaatttgtctacctcccaaattacaatcaattgtg 10531372  T
Q  121 atttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaa 168  Q
    || || | ||||||| |||  ||  ||||||| |||||||||||||||    
T  10531373 atatctttccaaagagcaacgccgcctgtaacagaatggggtctccaa 10531420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 13852918 - 13852822
Alignment:
Q  21 gatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatt 117  Q
    |||||||| ||| || ||||||||| ||||| |  |  |||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13852918 gatggacacgcttaccgctcttgaacggttggacttggaatgtcgagagttgtcattttgtgaaggagtttgtctacctcctaaattacaatcaatt 13852822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 11771898 - 11771993
Alignment:
Q  73 tcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaa 168  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || ||  ||||||| ||||| |||| | || || |||||||||||||||    
T  11771898 tcattttgtgaaggagtttgtctacctcccaacttacaatcaattgtgagtttttcccaaataacaacaccaccagttacagaatggggtctccaa 11771993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 11779387 - 11779292
Alignment:
Q  73 tcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaa 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||  || ||  ||||||| ||||| |||| | || || |||||||||||||||    
T  11779387 tcattttgtgaaagagtttgtctacctcccaaattacaatcaattgtgagtttttcccaaataacaacaccaccagttacagaatggggtctccaa 11779292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 10503240 - 10503312
Alignment:
Q  67 gagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaa 139  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||   ||||  |||||||||||||    
T  10503240 gagttatcattttgtgaaggagtttgtcttcctcccaaattacaatcaattgatatttggtcccaaagaacaa 10503312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 10680072 - 10680167
Alignment:
Q  21 gatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatt 117  Q
    |||||||| |||||| |||||||||   | || |||| | ||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  10680072 gatggacacgctcactgctcttgaacaatagactctagattgtccagagttgttattt-gtgaaggagtttgtctacctcccaaattacaatcaatt 10680167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 10091457 - 10091499
Alignment:
Q  69 gttgtcattttgtgaaggagtttgtctacctcccaaattacaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10091457 gttgtcattttgtgaaggagtttgtctacctcccaaattacaa 10091499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 10198339 - 10198381
Alignment:
Q  69 gttgtcattttgtgaaggagtttgtctacctcccaaattacaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10198339 gttgtcattttgtgaaggagtttgtctacctcccaaattacaa 10198381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 10583123 - 10583221
Alignment:
Q  19 aagatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatt 117  Q
    |||||||| |||||||| ||||||||||  ||| || | |||||   | |||||||||||| |||||||||||||||||||| |||||||| |||||||    
T  10583123 aagatggaaatgctcaccgctcttgaaaatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctctcaaattacgatcaatt 10583221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 10085907 - 10085944
Alignment:
Q  61 tgtgcagagttgtcattttgtgaaggagtttgtctacc 98  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  10085907 tgtggagagttgtcattttgtgaaggagtttgcctacc 10085944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 10192827 - 10192864
Alignment:
Q  61 tgtgcagagttgtcattttgtgaaggagtttgtctacc 98  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  10192827 tgtggagagttgtcattttgtgaaggagtttgcctacc 10192864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 68 - 213
Target Start/End: Complemental strand, 55012 - 54867
Alignment:
Q  68 agttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaaaccatctgtaacggaatggggtctcca 167  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||  ||||||  || ||| ||||  |||  | || |||||||||||||||||    
T  55012 agttgtcattttctgaaggagtttgtctacctctcaaattacaatcaattgtgatttctaccaaaaaaacagcaccgccggttacggaatggggtctcca 54913  T
Q  168 atatttgacagcactttccttattgacaattgaaaagggtgatgat 213  Q
    |||||||||||| ||||  || |||   |||| |||||||||||||    
T  54912 atatttgacagctcttttttttttgtgtattgtaaagggtgatgat 54867  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 26909500 - 26909647
Alignment:
Q  21 gatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacg 120  Q
    |||||||| |||||||| |||||||  |||| ||||  | |||  ||||||||||||||||||||| ||||||||||||||||| ||||||||||||       
T  26909500 gatggacacgctcacagatcttgaacagttgtatctggactgtcgagagttgtcattttgtgaaggtgtttgtctacctcccaacttacaatcaattgac 26909599  T
Q  121 atttcatcccaaagaacaaaaccatctgtaacggaatggggtctccaa 168  Q
     |||  || |||| ||||| ||| ||||| ||||||||| ||||||||    
T  26909600 ctttggtctcaaataacaacaccgtctgttacggaatggtgtctccaa 26909647  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 11487641 - 11487737
Alignment:
Q  21 gatggacatgctcacagctcttgaaaggttgaatctaaaatgtgcagagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatt 117  Q
    ||||||||||||||| |||||||||   |||  ||| || ||| |||||||||||||||||||||  |||| |||||||||||||||| ||||||||    
T  11487641 gatggacatgctcactgctcttgaagttttgtctctgaattgtccagagttgtcattttgtgaagatgtttctctacctcccaaattagaatcaatt 11487737  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 44955066 - 44955024
Alignment:
Q  71 tgtcattttgtgaaggagtttgtctacctcccaaattacaatc 113  Q
    |||||||||||||||| ||||| ||||||||||||||||||||    
T  44955066 tgtcattttgtgaaggtgtttgcctacctcccaaattacaatc 44955024  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 17850338 - 17850287
Alignment:
Q  66 agagttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatt 117  Q
    ||||||||||||||||| ||||||||  ||||||||||| ||||||||||||    
T  17850338 agagttgtcattttgtggaggagtttccctacctcccaagttacaatcaatt 17850287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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