View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_55 (Length: 211)
Name: NF6563_low_55
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 39287775 - 39287603
Alignment:
| Q |
17 |
caaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgca |
116 |
Q |
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| T |
39287775 |
caaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgca |
39287676 |
T |
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| Q |
117 |
ccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcct |
189 |
Q |
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| T |
39287675 |
ccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcct |
39287603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 39491260 - 39491432
Alignment:
| Q |
17 |
caaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491260 |
caaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgca |
39491359 |
T |
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| Q |
117 |
ccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcct |
189 |
Q |
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| T |
39491360 |
ccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcct |
39491432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 5906115 - 5905995
Alignment:
| Q |
34 |
gaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgcaccctgctgttgcttgtt |
133 |
Q |
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| T |
5906115 |
gaatttccaaaagggtttttggaagaaacaaaaggaagaggtttggttgtaacatggtgtaatcaagagaaggttttaagccaccctgcagtggcttgtt |
5906016 |
T |
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| Q |
134 |
ttctaagtcattgtggttgga |
154 |
Q |
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| T |
5906015 |
ttttgtctcattgtggttgga |
5905995 |
T |
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