View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6563_low_57 (Length: 205)

Name: NF6563_low_57
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6563_low_57
NF6563_low_57
[»] chr3 (11 HSPs)
chr3 (67-195)||(48648471-48648599)
chr3 (67-195)||(51827158-51827279)
chr3 (69-182)||(11651579-11651692)
chr3 (1-42)||(18014668-18014709)
chr3 (1-42)||(46352630-46352671)
chr3 (1-41)||(52520678-52520718)
chr3 (1-39)||(272219-272257)
chr3 (1-39)||(49893330-49893368)
chr3 (1-38)||(28139309-28139346)
chr3 (1-38)||(39074419-39074456)
chr3 (1-38)||(52246582-52246619)
[»] chr4 (15 HSPs)
chr4 (67-195)||(24158125-24158252)
chr4 (1-49)||(29591178-29591226)
chr4 (69-168)||(5590689-5590788)
chr4 (69-168)||(48127582-48127681)
chr4 (1-54)||(46688359-46688412)
chr4 (1-38)||(32217045-32217082)
chr4 (1-41)||(12701919-12701959)
chr4 (1-41)||(15186240-15186280)
chr4 (1-40)||(11893551-11893590)
chr4 (1-32)||(36395248-36395279)
chr4 (1-39)||(4268971-4269009)
chr4 (1-39)||(18068028-18068066)
chr4 (1-42)||(789679-789720)
chr4 (1-42)||(47232021-47232062)
chr4 (1-38)||(54897308-54897345)
[»] chr7 (8 HSPs)
chr7 (69-194)||(31953959-31954083)
chr7 (69-182)||(31954876-31954989)
chr7 (1-40)||(18485959-18485998)
chr7 (1-40)||(34333282-34333321)
chr7 (1-39)||(27456262-27456299)
chr7 (1-42)||(29993636-29993677)
chr7 (1-38)||(34606261-34606298)
chr7 (2-38)||(47118114-47118150)
[»] chr6 (10 HSPs)
chr6 (67-181)||(33435606-33435719)
chr6 (1-46)||(3515758-3515803)
chr6 (1-40)||(7851308-7851347)
chr6 (1-40)||(20897946-20897985)
chr6 (1-40)||(23402136-23402175)
chr6 (1-39)||(27433491-27433529)
chr6 (1-38)||(392096-392133)
chr6 (1-41)||(3026158-3026196)
chr6 (1-41)||(29716726-29716766)
chr6 (1-41)||(32929657-32929697)
[»] chr2 (6 HSPs)
chr2 (71-182)||(23502206-23502316)
chr2 (1-40)||(30486208-30486247)
chr2 (1-42)||(561667-561708)
chr2 (1-40)||(35851918-35851957)
chr2 (1-39)||(32361018-32361056)
chr2 (1-40)||(45261901-45261941)
[»] chr5 (9 HSPs)
chr5 (67-182)||(19366220-19366335)
chr5 (69-168)||(22799419-22799518)
chr5 (69-182)||(41045665-41045778)
chr5 (1-40)||(10054501-10054540)
chr5 (1-38)||(10069969-10070006)
chr5 (1-42)||(21945010-21945051)
chr5 (1-41)||(13661805-13661845)
chr5 (1-41)||(35132519-35132559)
chr5 (12-40)||(40056705-40056733)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-40)||(68439-68478)
[»] chr1 (7 HSPs)
chr1 (69-168)||(50271442-50271541)
chr1 (1-40)||(28726055-28726094)
chr1 (1-39)||(29657770-29657808)
chr1 (2-40)||(29683193-29683231)
chr1 (2-40)||(42770140-42770178)
chr1 (1-42)||(18043158-18043199)
chr1 (1-38)||(38595902-38595939)
[»] chr8 (7 HSPs)
chr8 (1-48)||(13643002-13643049)
chr8 (1-48)||(13743427-13743474)
chr8 (1-40)||(33357278-33357317)
chr8 (1-38)||(16394210-16394247)
chr8 (1-38)||(30675721-30675758)
chr8 (1-38)||(39751621-39751658)
chr8 (1-41)||(168463-168503)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-39)||(53834-53872)
[»] scaffold0188 (1 HSPs)
scaffold0188 (1-49)||(6259-6307)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 48648599 - 48648471
Alignment:
Q  67 tagcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaaga 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||    
T  48648599 tagcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctatagatagaaacgatcggctcttggcattggaacaaaatgaaga 48648500  T
Q  167 atgcgtaattttttttctaggtttacctt 195  Q
    ||||||||||||||||||| |||||||||    
T  48648499 atgcgtaattttttttctaagtttacctt 48648471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 51827158 - 51827279
Alignment:
Q  67 tagcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaaga 166  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||      ||||||||||||||||    
T  51827158 tagcataagattaagaagaagaaaaaatgagggttatag-aaacgagttgttatctgtagataaaaacgattggctct------tggaacaaaatgaaga 51827250  T
Q  167 atgcgtaattttttttctaggtttacctt 195  Q
    ||||||||||||||||||| |||||||||    
T  51827251 atgcgtaattttttttctaagtttacctt 51827279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 11651692 - 11651579
Alignment:
Q  69 gcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaagaat 168  Q
    |||||||||||||||||||||| ||||  | |||||||||||||||| | ||||| | ||||||| | |||  |||||||| ||||||||||||||||||    
T  11651692 gcataagattaagaagaagaaataatggagcttatagaaaacgagttatcatctgcaaatagaaaaggttgaatcttggcattggaacaaaatgaagaat 11651593  T
Q  169 gcgtaatttttttt 182  Q
      |||||| |||||    
T  11651592 aagtaattattttt 11651579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18014709 - 18014668
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctttt 42  Q
    ||||| |||||||| |||||||||||||||||||||||||||    
T  18014709 cttaatcagtgccccgggggcaccagttagcatttccctttt 18014668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46352671 - 46352630
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctttt 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  46352671 cttaaccagtgccccgggggcaccggttagcatttccctttt 46352630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 52520718 - 52520678
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttt 41  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  52520718 cttaaccagtgccccgggggcaccggttagcatttcccttt 52520678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 272257 - 272219
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccct 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  272257 cttaaccagtgccccgggggcaccggttagcatttccct 272219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 49893368 - 49893330
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccct 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  49893368 cttaaccagtgccccgggggcaccggttagcatttccct 49893330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28139346 - 28139309
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  28139346 cttaaccagtgtcttgggggcaccagttagcatttccc 28139309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39074456 - 39074419
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  39074456 cttaaccagtgccccgggggcaccggttagcatttccc 39074419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 52246619 - 52246582
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    |||||||||||||| || ||||||||||||||||||||    
T  52246619 cttaaccagtgccccggaggcaccagttagcatttccc 52246582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 24158252 - 24158125
Alignment:
Q  67 tagcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaaga 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  24158252 tagcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgatcggctcttggcattggaacaaaatgaaga 24158153  T
Q  167 atgcgtaattttttttctaggtttacctt 195  Q
    ||||||||||| ||||||| |||||||||    
T  24158152 atgcgtaattt-ttttctaagtttacctt 24158125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29591226 - 29591178
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttttaataatt 49  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29591226 cttaaccagtgccccgggggcaccagttagcatttcccttttaataatt 29591178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 5590689 - 5590788
Alignment:
Q  69 gcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaagaat 168  Q
    |||||||||||||||||||||| ||||  | |||||||||||||||| | || || | ||||||| | |||  |||||||| ||||||||||||||||||    
T  5590689 gcataagattaagaagaagaaataatggagcttatagaaaacgagttatcatatgcaaatagaaaaggttgaatcttggcattggaacaaaatgaagaat 5590788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 48127681 - 48127582
Alignment:
Q  69 gcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaagaat 168  Q
    |||||||||||||||||||||| ||||  | |||||||||||||||| | || || | ||||||| | |||  |||||||| ||||||||||||||||||    
T  48127681 gcataagattaagaagaagaaataatggagcttatagaaaacgagttatcatatgcaaatagaaaaggttgaatcttggcattggaacaaaatgaagaat 48127582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 46688359 - 46688412
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttttaataattgtatc 54  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||||| ||||    
T  46688359 cttaaccagtgcctcgggggcaccagttagcatttcccttataataattatatc 46688412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32217082 - 32217045
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  32217082 cttaaccagtgccccgggggcaccagttagcatttccc 32217045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12701919 - 12701959
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttt 41  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  12701919 cttaaccagtgccccgggggcaccagttaacatttcccttt 12701959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15186280 - 15186240
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttt 41  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  15186280 cttaaccagtgccccgggggcaccggttagcatttcccttt 15186240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11893551 - 11893590
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  11893551 cttaaacagtgccctgggggcacctgttagcatttccctt 11893590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 36395248 - 36395279
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagca 32  Q
    ||||||||||||||||||||||||||||||||    
T  36395248 cttaaccagtgccctgggggcaccagttagca 36395279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4268971 - 4269009
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccct 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  4268971 cttaaccagtgccccgggggcaccggttagcatttccct 4269009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18068028 - 18068066
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccct 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  18068028 cttaaccagtgccccgggggcaccggttagcatttccct 18068066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 789679 - 789720
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctttt 42  Q
    ||||||| |||||| ||||||||| |||||||||||||||||    
T  789679 cttaacccgtgccccgggggcaccggttagcatttccctttt 789720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 47232021 - 47232062
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctttt 42  Q
    |||||||||||| | ||||||||| |||||||||||||||||    
T  47232021 cttaaccagtgctccgggggcaccggttagcatttccctttt 47232062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 54897345 - 54897308
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  54897345 cttaaccagtgccccgggggcaccggttagcatttccc 54897308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 31953959 - 31954083
Alignment:
Q  69 gcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaagaat 168  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31953959 gcataagattaagaagaagaaaaaatgaggattatagaaaacgagttgttatctgtagatagaaacgattggctcttggcattggaacaaaatgaagaat 31954058  T
Q  169 gcgtaattttttttctaggtttacct 194  Q
    |||||| |||||||||| ||||||||    
T  31954059 gcgtaa-tttttttctaagtttacct 31954083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 31954876 - 31954989
Alignment:
Q  69 gcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaagaat 168  Q
    |||||||||||||||||||||| ||||  | |||| ||||||||||| | ||||| | ||||||| | |||  |||||||| ||||||||||||||||||    
T  31954876 gcataagattaagaagaagaaataatggagcttatggaaaacgagttatcatctgcaaatagaaaaggttgaatcttggcattggaacaaaatgaagaat 31954975  T
Q  169 gcgtaatttttttt 182  Q
      |||||| |||||    
T  31954976 aagtaattattttt 31954989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18485998 - 18485959
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  18485998 cttaaccagtgccccgggggcaccggttagcatttccctt 18485959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34333321 - 34333282
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  34333321 cttaaccagtgccccgggggcaccggttagcatttccctt 34333282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27456262 - 27456299
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccct 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  27456262 cttaaccagtgccc-gggggcaccagttagcatttccct 27456299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29993636 - 29993677
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctttt 42  Q
    ||||||| |||||| ||||||||| |||||||||||||||||    
T  29993636 cttaaccggtgccccgggggcacccgttagcatttccctttt 29993677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34606298 - 34606261
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    |||||||||||||| || ||||||||||||||||||||    
T  34606298 cttaaccagtgccccggaggcaccagttagcatttccc 34606261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 47118114 - 47118150
Alignment:
Q  2 ttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    ||||||||||||| || ||||||||||||||||||||    
T  47118114 ttaaccagtgccccggaggcaccagttagcatttccc 47118150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 33435719 - 33435606
Alignment:
Q  67 tagcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaaga 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  33435719 tagcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgt-atctgtagatagaaacgattggctcttggcattggaataaaatgaaga 33435621  T
Q  167 atgcgtaattttttt 181  Q
    |||||||||||||||    
T  33435620 atgcgtaattttttt 33435606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3515803 - 3515758
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttttaata 46  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||    
T  3515803 cttaaccagtgccctgggggcaccggttagcatttccctttaaata 3515758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7851308 - 7851347
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  7851308 cttaaccagtgccctgggggcaccggttagcatttccctt 7851347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 20897985 - 20897946
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  20897985 cttaaccagtgccctgggggcaccggttagcatttccctt 20897946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23402175 - 23402136
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  23402175 cttaaccagtgccccggaggcaccagttagcatttccctt 23402136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27433529 - 27433491
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccct 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  27433529 cttaaccagtgccccgggggcaccggttagcatttccct 27433491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 392133 - 392096
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  392133 cttaaccagtgccccgggggcaccggttagcatttccc 392096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3026158 - 3026196
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttt 41  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  3026158 cttaaccagtgccc--ggggcaccagttagcatttcccttt 3026196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29716766 - 29716726
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttt 41  Q
    |||||||||||||| |||||||| ||||| |||||||||||    
T  29716766 cttaaccagtgccccgggggcactagttaacatttcccttt 29716726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32929657 - 32929697
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttt 41  Q
    |||||||| ||||| ||||||||| ||||||||||||||||    
T  32929657 cttaaccattgccccgggggcaccggttagcatttcccttt 32929697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 71 - 182
Target Start/End: Original strand, 23502206 - 23502316
Alignment:
Q  71 ataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaagaatgc 170  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  |  || ||| | ||||||||| ||| |||||||||||||||||||     
T  23502206 ataagattaagaagaagaaaaaatgaggcttatagaaaacgagttgttatctacaactaaaaaaggttggctctt-gcattggaacaaaatgaagaatga 23502304  T
Q  171 gtaatttttttt 182  Q
    |||| |||||||    
T  23502305 gtaaattttttt 23502316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30486247 - 30486208
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  30486247 cttaaccagtgccccgggggcaccagttagcatttccctt 30486208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 561667 - 561708
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctttt 42  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  561667 cttaaccagtgccccgggggcaccggttagcatttccctttt 561708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35851918 - 35851957
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  35851918 cttaaccagtgccccgggggcaccggttagcatttccctt 35851957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32361018 - 32361056
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccct 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  32361018 cttaaccagtgccccgggggcaccggttagcatttccct 32361056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45261941 - 45261901
Alignment:
Q  1 cttaaccagtgccctggggg-caccagttagcatttccctt 40  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  45261941 cttaaccagtgccctggggggcaccggttagcatttccctt 45261901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 182
Target Start/End: Original strand, 19366220 - 19366335
Alignment:
Q  67 tagcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaaga 166  Q
    |||||||||||||||||||||||| ||||  | |||||||||||||||| | ||||  | |||||||   |||  |||||||| ||||||||||||||||    
T  19366220 tagcataagattaagaagaagaaataatggagcttatagaaaacgagttatcatctccaaatagaaaaagttgaatcttggcattggaacaaaatgaaga 19366319  T
Q  167 atgcgtaatttttttt 182  Q
    ||  ||||||||||||    
T  19366320 ataagtaatttttttt 19366335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 22799419 - 22799518
Alignment:
Q  69 gcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaagaat 168  Q
    ||||||||||||||| |||||| ||||  | |||||||||||||||| | ||||| | ||||||| | |||  |||||||| ||||||||||||||||||    
T  22799419 gcataagattaagaaaaagaaataatggagcttatagaaaacgagttatcatctgcaaatagaaaaggttgaatcttggcattggaacaaaatgaagaat 22799518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 41045778 - 41045665
Alignment:
Q  69 gcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaagaat 168  Q
    |||||||||||||||||||| | ||||  | |||||||||| ||||| | ||||| | ||||||| | |||  |||||||| ||||||||||||||||||    
T  41045778 gcataagattaagaagaagatataatggagcttatagaaaatgagttatcatctgcaaatagaaaaggttgaatcttggcattggaacaaaatgaagaat 41045679  T
Q  169 gcgtaatttttttt 182  Q
      |||||| |||||    
T  41045678 aagtaattattttt 41045665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10054501 - 10054540
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  10054501 cttaaccagtgccccgggggcaccggttagcatttccctt 10054540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10070006 - 10069969
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  10070006 cttaaccagtgccccgggggcaccggttagcatttccc 10069969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21945010 - 21945051
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctttt 42  Q
    |||||||||||||| || |||||| |||||||||||||||||    
T  21945010 cttaaccagtgccccggaggcaccggttagcatttccctttt 21945051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13661845 - 13661805
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttt 41  Q
    |||||||||||| | ||||||||| ||||||||||||||||    
T  13661845 cttaaccagtgctccgggggcaccggttagcatttcccttt 13661805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35132559 - 35132519
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttt 41  Q
    ||||||||||| || ||||||||| ||||||||||||||||    
T  35132559 cttaaccagtgtcccgggggcaccggttagcatttcccttt 35132519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 40056733 - 40056705
Alignment:
Q  12 ccctgggggcaccagttagcatttccctt 40  Q
    |||||||||||||||||||||||||||||    
T  40056733 ccctgggggcaccagttagcatttccctt 40056705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 68439 - 68478
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  68439 cttaaccagtgccccgggggcaccagttagcatttccctt 68478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 50271442 - 50271541
Alignment:
Q  69 gcataagattaagaagaagaaaaaatgagggttatagaaaacgagttgttatctgtagatagaaacgattggctcttggcaatggaacaaaatgaagaat 168  Q
    ||||||||||||||||| |||| ||||  | |||||||||||||||| | ||||| | |||||||   |||  |||||||| ||||| ||||||||||||    
T  50271442 gcataagattaagaagatgaaataatggagcttatagaaaacgagttatcatctgcaaatagaaaatgttgaatcttggcattggaataaaatgaagaat 50271541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28726055 - 28726094
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  28726055 cttaaccagtgccccgggggcaccggttagcatttccctt 28726094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29657808 - 29657770
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccct 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  29657808 cttaaccagtgccccgggggcaccggttagcatttccct 29657770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 29683231 - 29683193
Alignment:
Q  2 ttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  29683231 ttaaccagtgccccgggggcaccggttagcatttccctt 29683193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 42770140 - 42770178
Alignment:
Q  2 ttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  42770140 ttaaccagtgccccgggggcaccggttagcatttccctt 42770178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18043199 - 18043158
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctttt 42  Q
    |||||||||||||| || |||||| |||||||||||||||||    
T  18043199 cttaaccagtgccccggaggcaccggttagcatttccctttt 18043158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38595902 - 38595939
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  38595902 cttaaccagtgccccgggggcaccggttagcatttccc 38595939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13643049 - 13643002
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttttaataat 48  Q
    |||||||||||||| ||||||||| |||||||||| ||||| ||||||    
T  13643049 cttaaccagtgccccgggggcaccggttagcattttcctttaaataat 13643002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13743474 - 13743427
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttttaataat 48  Q
    |||||||||||||| ||||||||| |||||||||| ||||| ||||||    
T  13743474 cttaaccagtgccccgggggcaccggttagcattttcctttaaataat 13743427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33357278 - 33357317
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccctt 40  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  33357278 cttaaccagtgctccgggggcaccagttagcatttccctt 33357317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16394210 - 16394247
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  16394210 cttaaccagtgccccgggggcaccggttagcatttccc 16394247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30675721 - 30675758
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  30675721 cttaaccagtgccccgggggcaccggttagcatttccc 30675758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39751621 - 39751658
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccc 38  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  39751621 cttaaccagtgccccgggggcaccggttagcatttccc 39751658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 168503 - 168463
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttt 41  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  168503 cttaaccagtgccccggaggcaccggttagcatttcccttt 168463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 53834 - 53872
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttccct 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  53834 cttaaccagtgccccgggggcaccggttagcatttccct 53872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6259 - 6307
Alignment:
Q  1 cttaaccagtgccctgggggcaccagttagcatttcccttttaataatt 49  Q
    ||||||||||||||  |||||||| |||||||||||| |||||| ||||    
T  6259 cttaaccagtgccccaggggcaccggttagcatttcctttttaacaatt 6307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University