View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_58 (Length: 205)
Name: NF6563_low_58
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 13111969 - 13112145
Alignment:
| Q |
15 |
aattctcagaaacggcaagtggtttaggtgctaaaatgctgctaagtggtgcttgctgaagcgctcaactttcattaata-----ctaaacgctgcttac |
109 |
Q |
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| T |
13111969 |
aattctcagaaacggcaagtggtttaggtgctaaaatgctgctaagtggtgcttgctgaagcgctcaactttcattaatatactactaaacgctgtttac |
13112068 |
T |
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| Q |
110 |
atcagaaaatttctttatttttaatattcattccttctatttataatacttgatcttctttgctactaattagaagt |
186 |
Q |
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| T |
13112069 |
atcagaaaatttctttatttttaatattcattccttctatttataatacttgatcttctttgctactaattagaagt |
13112145 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 14515861 - 14515776
Alignment:
| Q |
36 |
gtttaggtgctaaaatgctgctaagtggtgcttgctgaagcgctcaactttcattaatactaaacgctgcttacatcagaaaattt |
121 |
Q |
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| T |
14515861 |
gtttaggtgctaaaatgctgctaagtggtgcttgctaaagcatgcagcattcatcaacgctaaatgttgcttacataagaaaattt |
14515776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 18513750 - 18513671
Alignment:
| Q |
36 |
gtttaggtgctaaaatgctgctaagtggtgcttgctgaagcgctcaactttcattaatactaaacgctgcttacatcagaaaatttct |
123 |
Q |
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| T |
18513750 |
gtttaggtgctaaaatgttgctaagtcgtgtttgctgaagcg--------ttattaacactaaatgttgcttacatcagaaaatttct |
18513671 |
T |
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