View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6563_low_9 (Length: 584)
Name: NF6563_low_9
Description: NF6563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6563_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 9864402 - 9864104
Alignment:
| Q |
13 |
gacatcatcatcggacaaagagatctcgtctcgactatgctgagatctcaaactcgaaacaattatatgcagcataaacaatcatataatgaaaatcgat |
112 |
Q |
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| T |
9864402 |
gacatcattatcggacaaagagatctcgtctcgactatgttgagatctcaaactcgaaacaattatatgcagcataaacaatcatataatgaaaatcgat |
9864303 |
T |
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| Q |
113 |
ttaagatatagaaacttacaagtatgtcagaagtgattcgaggatgtgaataaggctttgtcagaaaatgcaaaccattgcacataatcaccataaccat |
212 |
Q |
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| T |
9864302 |
ttaagatatagaaacttacaagtatgtcagaagtgattcgaggatgtgaataaggctttgtcagaaaatgcaaaccattgcacataatcaccataaccat |
9864203 |
T |
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| Q |
213 |
aaatagaaaaaagttttttcctacttcaacagtaagattagtcaacttttcacgacattgagagggttcttctgccatattgacaatccaaaatcaacc |
311 |
Q |
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| T |
9864202 |
aaatagaaaaaagttttttcctacttcaacagtgagattagtcaacttttcacgacattgagagggttcttctgccatattgacaatccaaaatcaacc |
9864104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 411 - 566
Target Start/End: Complemental strand, 9864004 - 9863849
Alignment:
| Q |
411 |
gtaacttttgtttaggtattgaataattgtcnnnnnnntgtttttgtgaaagccaatggttgttatttcttagctttgttttaggagaaaatagaggagc |
510 |
Q |
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| T |
9864004 |
gtaacttttgtttaggtattgaataattgtcaaaaaaatgtttttgtgaaagccaatggttgttatttcttagctttgtttaaggagaaaatagaggagc |
9863905 |
T |
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| Q |
511 |
actctaaggacatcaaagacatacaaggtgatatgatagtggatctttgagacata |
566 |
Q |
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| T |
9863904 |
actctaaggacatcaaagacatacaaggtgatatgatagtggatctttgagacata |
9863849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 13955231 - 13955311
Alignment:
| Q |
135 |
tatgtcagaagtgattcgaggatgtgaataaggctttgtcagaaaatgcaaaccattgcacataatcaccataaccataaa |
215 |
Q |
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| T |
13955231 |
tatgtcggaagtaatgcgaggttgtttataaggctttagaagaaaatgtaaaccattgcatacaatcaccatcaccataaa |
13955311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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