View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6564_high_11 (Length: 251)
Name: NF6564_high_11
Description: NF6564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6564_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4241414 - 4241172
Alignment:
| Q |
1 |
tgtattgtatttttgggttttgtgattcaaaatcccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtgaagatttaagatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4241414 |
tgtattgtatttttgggttttgtgattcaaaatcccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtgaagatttaagatt |
4241315 |
T |
|
| Q |
101 |
tggaacaattgtttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4241314 |
tggaacaattgtttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaaccttagccaaaatatg |
4241215 |
T |
|
| Q |
201 |
tcgaaaaaagtgagagagattgaggttgtttggtttgatgatg |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4241214 |
tcgaaaaaagtgagagagattgaggttgtttggtttgatgatg |
4241172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 4250620 - 4250424
Alignment:
| Q |
35 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
134 |
Q |
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||||||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||| |||| || | |
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| T |
4250620 |
ccaaacgatgttaccagctaaagggagaaaatgttggagggttaaagagagtgatgatttgagatttggaacaatcgtttgaaagaagaaagaagggtgt |
4250521 |
T |
|
| Q |
135 |
gattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatgtcgaaaaaagtgagagagattgaggttgttt |
231 |
Q |
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| T |
4250520 |
gattgtgaatttgggagggtgtagaagaaaactcgttctactggatggaaccttagccaaaatatgtcgaagaaagtaagagggattgaggtggttt |
4250424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 4195843 - 4195635
Alignment:
| Q |
35 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
134 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||||||||| ||||| | ||||||||| ||| ||||||||| | |||| || ||||| ||||||| | |
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| T |
4195843 |
ccaaacgattttaccagctaaaggaagaaagtgttggagggttaaagagaatgaagatttgagaattggaacaagtttttggaaaaagaaagaagtgtgt |
4195744 |
T |
|
| Q |
135 |
gattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatgtcgaaaaaagtgagagagattgaggttgtttggt |
234 |
Q |
| |
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|| ||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| || |||| |||| | ||| ||| ||||| |
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| T |
4195743 |
gaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaacctaagccaaaatatgtcaaagtaagtaagaggggttgttgttttttggg |
4195644 |
T |
|
| Q |
235 |
ttgatgatg |
243 |
Q |
| |
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||||||||| |
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|
| T |
4195643 |
ttgatgatg |
4195635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 4188954 - 4188746
Alignment:
| Q |
35 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
134 |
Q |
| |
|
|||||| || ||||| |||||||| ||||||||||||||||| ||||| ||||| ||| | ||| ||||||| | | ||||||||||||| |||| || | |
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| T |
4188954 |
ccaaacaattttaccagctaaagggagaaagtgttggagggttaaagagagtgatgatctgagaattggaactagtttttgaaagaagaaagaagggtgt |
4188855 |
T |
|
| Q |
135 |
gattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatgtcgaaaaaagtgagagagattgaggttgtttggt |
234 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||| ||||||||| | | ||||||||||||||| ||||||| || |||| || |||||| |
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| T |
4188854 |
gattgtgaatttgggagggtgtaaaagaagattcgttctataggatggaactttatccaaaatatgtcgaagaaagtgaaaggaattgttgtagtttggg |
4188755 |
T |
|
| Q |
235 |
ttgatgatg |
243 |
Q |
| |
|
||||||||| |
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|
| T |
4188754 |
ttgatgatg |
4188746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 4233592 - 4233425
Alignment:
| Q |
35 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
134 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| | |||||| ||||| ||||||||||| ||| ||||||||| | | |||||||| |||| || | |
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| T |
4233592 |
ccaaacgatgttaccagctaaagggagaaagtccttgagggttaaagagagtgaagatttgagaattggaacaagcttcttgaagaagaaagaagggtgt |
4233493 |
T |
|
| Q |
135 |
gattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaaatatgtc |
202 |
Q |
| |
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|| |||||||||||||||| |||||| || | ||||| |||||||||||| |||||||||||||| |
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| T |
4233492 |
gaatgtgaatttgggagggcgtagaagaaaacacgttctactggatggaaccttagccaaaatatgtc |
4233425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 4102543 - 4102418
Alignment:
| Q |
35 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
134 |
Q |
| |
|
||||||||||||||| |||||||| || |||| ||||||||| ||||| |||||| |||| || |||||||||| ||| ||| ||| | |||| || | |
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| T |
4102543 |
ccaaacgatgttaccagctaaagggaggaagttttggagggttaaagagagtgaatatttgagttttggaacaaggttttcaaaaaagtaagaagggtgt |
4102444 |
T |
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| Q |
135 |
gattgtgaatttgggagggtgtagaa |
160 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
4102443 |
gattgtgaatttgggagggtgtagaa |
4102418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 195
Target Start/End: Complemental strand, 4122020 - 4121860
Alignment:
| Q |
35 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
134 |
Q |
| |
|
||||||||||||||| |||||||| | || | ||||||||| ||||| ||||||||||| || |||||||||| ||| || ||||| |||| || | |
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| T |
4122020 |
ccaaacgatgttaccagctaaaggtgggaatttttggagggttaaagagagtgaagatttgagttttggaacaaggttttcaacaaagaaagaagggtgt |
4121921 |
T |
|
| Q |
135 |
gattgtgaatttgggagggtgtagaataagatgtattctattggatggaacctaagccaaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| | |||||| ||||| ||||||| |
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|
| T |
4121920 |
gattgtgaatttgggagggtgtagaagaagatacgttcaactggatgaaaccttagccaaa |
4121860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 4192084 - 4191969
Alignment:
| Q |
45 |
ttaccggctaaaggaagaaagtgttggagggtcaaagaaagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtctgattgtgaat |
144 |
Q |
| |
|
||||| |||||||| |||||||||| |||||| ||||| |||||||||| ||| ||| ||||| |||| |||||||| |||| || |||||||||| |
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| T |
4192084 |
ttaccagctaaagggagaaagtgtttgagggttaaagagggtgaagatttgagaattgtaacaagcttttggaagaagaaagaagggtgtgattgtgaac |
4191985 |
T |
|
| Q |
145 |
ttgggagggtgtagaa |
160 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
4191984 |
ttgggagggtgtagaa |
4191969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 4094995 - 4094870
Alignment:
| Q |
35 |
ccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtgaagatttaagatttggaacaattgtttgaaagaagaatgaagtgtct |
134 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||| || || ||||| ||||||||||| || |||||||||| ||| ||||| || | || || | |
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| T |
4094995 |
ccaaacgatgttaccagctaaagggaggaagtgttgtagagttaaagagagtgaagatttgagttttggaacaagattttcgaagaaaaaagtagggtgt |
4094896 |
T |
|
| Q |
135 |
gattgtgaatttgggagggtgtagaa |
160 |
Q |
| |
|
|| |||||| |||||||||||||||| |
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|
| T |
4094895 |
gagtgtgaacttgggagggtgtagaa |
4094870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 4101077 - 4101028
Alignment:
| Q |
134 |
tgattgtgaatttgggagggtgtagaataagatgtattctattggatgga |
183 |
Q |
| |
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||||||||| |||||||||||||| || |||||| |||||| |||||||| |
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| T |
4101077 |
tgattgtgattttgggagggtgtacaaaaagatgcattctactggatgga |
4101028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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