View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6564_high_13 (Length: 239)

Name: NF6564_high_13
Description: NF6564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6564_high_13
NF6564_high_13
[»] chr7 (3 HSPs)
chr7 (22-111)||(32548759-32548848)
chr7 (140-225)||(32547618-32547703)
chr7 (135-186)||(32647543-32647594)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 32548848 - 32548759
Alignment:
Q  22 ctatttgccaccttacaaaaatatttaataatttacgagaataaaacgtgcttctgattttcttttcaaaattgtgattctctattgcta 111  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32548848 ctatttgccaccttacaaaaatatttaataatttacaagaataaaacgtgcttctgattttcttttcaaaattgtgattctctattgcta 32548759  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 32547703 - 32547618
Alignment:
Q  140 atatataactatagttataagttgaccttataaagttcgaacctcttgatccagtgtactggatccgctattgatgccacacatac 225  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32547703 atatataactatagttataagctgaccttataaagttcgaacctcttgatccagtgtactggatccgctattgatgccacacatac 32547618  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 32647543 - 32647594
Alignment:
Q  135 attgtatatataactatagttataagttgaccttataaagttcgaacctctt 186  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||||||||    
T  32647543 attgtatatacgactataattataagttgaccttataaagttcgaacctctt 32647594  T

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