View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6564_high_2 (Length: 441)
Name: NF6564_high_2
Description: NF6564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6564_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 33675504 - 33675084
Alignment:
| Q |
8 |
tgagatgaaggcaacattattttgttgttacaagcaaacgtttcccacgttcttttacctcatctggtgtacagagatacattgaattttactattttag |
107 |
Q |
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| T |
33675504 |
tgagatgaaggcaacattattttgttgttacaagcaaacgtttcccacgttcttttacctcatctggtgtacagagatacattgaattttactattttag |
33675405 |
T |
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| Q |
108 |
gttaatccttcaaatgaagaaggaacaatttttcctcaaatttcaaaattgaagcatatatacaaggtgttgattttcgtctttggtacgacagttatt- |
206 |
Q |
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| T |
33675404 |
gttaatccttcaaatgaagaaggaacaatttttcctcaaatttcaaaattgaagcatatatacaaggtgttgattttcgtctttggtacgacagttatta |
33675305 |
T |
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| Q |
207 |
nnnnnnnnnnnntgaattgtccacgtagagatagaggaattaaaaagtacggaaaaacccaggtaaatagaccaaataga-nnnnnnnnnagggattaat |
305 |
Q |
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| T |
33675304 |
aaaaaaaaaatatgaattgtccacgtagagatagaggaattaaaaagtacggaaaaaccctgggaaatagaccaaatagattttttttttagggattaat |
33675205 |
T |
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| Q |
306 |
ctatttatttagaccaaaaggattacgtccttatagctatttggctttaaattttttaaatgagttatctatttattttagaagacctttgaggacggtt |
405 |
Q |
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| T |
33675204 |
ctattcatttagaccaaaaggattacgtccttatagctatttggctttaaattttttaaatgagttatctatttattttagaagacctttgaggacggtt |
33675105 |
T |
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| Q |
406 |
agtgaaatttacccaaattat |
426 |
Q |
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| T |
33675104 |
agtgaaatttacccaaattat |
33675084 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 33737239 - 33737183
Alignment:
| Q |
101 |
attttaggttaatccttcaaatgaagaaggaacaatttttcctcaaatttcaaaatt |
157 |
Q |
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| T |
33737239 |
attttcggttgatccttcaaatgaagaaggaactagttttccccaaatttcataatt |
33737183 |
T |
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