View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6564_low_1 (Length: 577)
Name: NF6564_low_1
Description: NF6564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6564_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 313073 - 313634
Alignment:
| Q |
1 |
tcatcaaaaatgatttttcatataaactaaaattaaaaagtgacatatttataagatttaaatggtatatctaaacaaaatataaattagtaaataaatt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
313073 |
tcattaaaaatgatttttcatataaactaaaattaaaaagtgacatatttataagatttaaatggtatatctaaaccaaatattaattaataaataaatt |
313172 |
T |
|
| Q |
101 |
acttgcctggatctcaatgagcacattagaaaatgcataggcaaatgcaatgtcaccaattgcttggaacatcctccacaccttttctgttgcagtaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
313173 |
acttgcctggatctcaatgagcacattagaaaatgcataggcaaatgcaatgtcaccaatagcttggaacatcctccacaccttttctgttgcagtaaca |
313272 |
T |
|
| Q |
201 |
tccaccccaatttgcacaccagttaaggatgtcgtcacatgatttcccccaccttcaaacattgacaaaagggannnnnnnnnnnnnnnnnnnnataatg |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
313273 |
tctaccccaatttgcacaccagttaaggatgttgtcacatgatttcccccaccttcaaacattgacaaaaaggaattattattattattatttaataatg |
313372 |
T |
|
| Q |
301 |
tgaacatgaccattttaatataagatattaattaactatatggtacc--aaaaaattatagttgaagtgatgcaatttgttacctgcaactttggctacg |
398 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
313373 |
tgaccatgaccattttaatataagatattaattaactatatggtaccaaaaaaaaatatagttgaagtgatgcaatttgttacctgcaactttggctacg |
313472 |
T |
|
| Q |
399 |
gaaaggccaaggccaatggaagagtaagcaaaagacatgactgctgcaacaattgagagccaagagagctcatggaaattgggaatctgacatagaacaa |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
313473 |
gaaaggccaaggccaatggaagagtaagcaaaagacataactgctgcaacaattgagagccaagagagctcatggaaattgggtatctggcaaagaacaa |
313572 |
T |
|
| Q |
499 |
tttgaatgcaggcaaaaatgatcatgaaagggttatttgagacatagcacttgtcttgatgt |
560 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
313573 |
tttgaatgcaagcaaaaatgatcatgaaagggttatttgagacatagcacttgtcttgatgt |
313634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 477
Target Start/End: Original strand, 47923676 - 47923773
Alignment:
| Q |
380 |
acctgcaactttggctacggaaaggccaaggccaatggaagagtaagcaaaagacatgactgctgcaacaattgagagccaagagagctcatggaaat |
477 |
Q |
| |
|
|||||||| |||||||| ||| || |||| || |||||||| ||| |||||||||||||||| |||| ||| |||||||| ||||| |||||||||| |
|
|
| T |
47923676 |
acctgcaattttggctatggagagaccaacacctatggaagaataaccaaaagacatgactgcagcaagaatagagagccaggagagttcatggaaat |
47923773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 489
Target Start/End: Original strand, 47917418 - 47917527
Alignment:
| Q |
380 |
acctgcaactttggctacggaaaggccaaggccaatggaagagtaagcaaaagacatgactgctgcaacaattgagagccaagagagctcatggaaattg |
479 |
Q |
| |
|
|||||||| |||||||| ||| || |||| ||| ||||||| ||| |||||||||||| || |||||||| |||||||| || || |||||||| ||| |
|
|
| T |
47917418 |
acctgcaattttggctatggagagaccaatgcctatggaagcataaccaaaagacatgatggcagcaacaatagagagccatgaaagttcatggaagttg |
47917517 |
T |
|
| Q |
480 |
ggaatctgac |
489 |
Q |
| |
|
||||| |||| |
|
|
| T |
47917518 |
ggaatttgac |
47917527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 477
Target Start/End: Original strand, 47909217 - 47909314
Alignment:
| Q |
380 |
acctgcaactttggctacggaaaggccaaggccaatggaagagtaagcaaaagacatgactgctgcaacaattgagagccaagagagctcatggaaat |
477 |
Q |
| |
|
|||||||| ||| |||| ||| || |||| ||| ||||||| ||| |||||||||||| || |||||||| |||||||| || || |||||||||| |
|
|
| T |
47909217 |
acctgcaattttcgctatggagagaccaatgcctatggaagcataaccaaaagacatgatggcagcaacaatagagagccatgaaagttcatggaaat |
47909314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 101 - 233
Target Start/End: Original strand, 51718952 - 51719084
Alignment:
| Q |
101 |
acttgcctggatctcaatgagcacattagaaaatgcataggcaaatgcaatgtcaccaattgcttggaacatcctccacaccttttctgttgcagtaaca |
200 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| | ||||| || || |||||||||||||| ||||| |||||||||||||||||||| || | ||||| |
|
|
| T |
51718952 |
acttgcctgtatctcaatgaggacattagaataagcataagcgaaggcaatgtcaccaatagcttgaaacatcctccacaccttttcagtccctgtaacg |
51719051 |
T |
|
| Q |
201 |
tccaccccaatttgcacaccagttaaggatgtc |
233 |
Q |
| |
|
|||||||||| |||||| || ||||| |||||| |
|
|
| T |
51719052 |
tccaccccaacttgcacccctgttaatgatgtc |
51719084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 378 - 538
Target Start/End: Original strand, 51719220 - 51719380
Alignment:
| Q |
378 |
ttacctgcaactttggctacggaaaggccaaggccaatggaagagtaagcaaaagacatgactgctgcaacaattgagagccaagagagctcatggaaat |
477 |
Q |
| |
|
|||||||| ||||| |||| || || || ||||||||||| || |||||||||||||| || ||||||||||| |||||||| || |||| ||| || | |
|
|
| T |
51719220 |
ttacctgccactttagctatagagagaccgaggccaatggatgaataagcaaaagacataacggctgcaacaatggagagccacgatagcttatgaaagt |
51719319 |
T |
|
| Q |
478 |
tgggaatctgacatagaacaatttgaatgcaggcaaaaatgatcatgaaagggttatttga |
538 |
Q |
| |
|
| || || || | || |||||||||||||| ||||| || ||||||||||| |||||||| |
|
|
| T |
51719320 |
ttggtatttggctaaggacaatttgaatgcaagcaaatattatcatgaaaggattatttga |
51719380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University