View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6564_low_3 (Length: 430)
Name: NF6564_low_3
Description: NF6564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6564_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 5066987 - 5066573
Alignment:
| Q |
1 |
gaatatgagaaactaaagttaattagacaaaacatttttgtaacaagattttctcagatgagttaaactaagtatgaggtaaaaaatattcattcatgta |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5066987 |
gaatatgagaaactaatgttaattagacaaaacatttttgtaacaagattttctcagatgagttaaactaagtatgaggtaaaaaatattcattcatgta |
5066888 |
T |
|
| Q |
101 |
ctttttggtaatttaccctattggttatgattgtaacannnnnnnnnggtatcactttttgtgtatggcaggtatgggaattttttcaaatctcacatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5066887 |
ctttttggtaatttaccctattggttatgattgtaacatttttttttggtatcactttttgtgtatggcaggtatgggaattttttcaaatctcacatat |
5066788 |
T |
|
| Q |
201 |
taggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatgaatgaagcaaaagggtttgttccaggataccctcaatccatgtt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5066787 |
taggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatgaatgaagcaaaagggtttgttccaggataccctcaatccatgtt |
5066688 |
T |
|
| Q |
301 |
agatatcttaggaaaatgtaacattgcagctgttcatggctccactcacaagtacatgagagggacattgctttcaatcattagtcccaccttaatcaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5066687 |
agatatcttaggaaaatgtaacattgcagctgttcatggctccactcacaagtacatgagagggacattgctttcaatcattagtcccaccttaatcaga |
5066588 |
T |
|
| Q |
401 |
aatcagcttttacct |
415 |
Q |
| |
|
||||||||||||||| |
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| T |
5066587 |
aatcagcttttacct |
5066573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 165 - 384
Target Start/End: Complemental strand, 975683 - 975464
Alignment:
| Q |
165 |
atggcaggtatgggaattttttcaaatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatgaatgaagc |
264 |
Q |
| |
|
||||||||| ||| | |||||||||||| |||||| | || ||||||||||||| |||||||||||||| || ||||||||||||||| |||||||| | |
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|
| T |
975683 |
atggcaggtttggaagttttttcaaatcacacatacttggcagtcctacaattgtttcaatggatccagagcttaatagatacatattgttgaatgaatc |
975584 |
T |
|
| Q |
265 |
aaaagggtttgttccaggataccctcaatccatgttagatatcttaggaaaatgtaacattgcagctgttcatggctccactcacaagtacatgagaggg |
364 |
Q |
| |
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|||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
975583 |
aaaaggtcttgttcctggataccctcaatctatgttagatatcttaggaaaatgtaatattgcagctgttcatggctccactcacaagtacatgagagga |
975484 |
T |
|
| Q |
365 |
acattgctttcaatcattag |
384 |
Q |
| |
|
|| | ||||| |||||||| |
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|
| T |
975483 |
gcacttctttccatcattag |
975464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 158 - 384
Target Start/End: Complemental strand, 5591025 - 5590799
Alignment:
| Q |
158 |
tttgtgtatggcaggtatgggaattttttcaaatctcacatattaggatgtcctacaattgtatcaatggatccagaactaaatagatacatattgatga |
257 |
Q |
| |
|
|||||| ||||||||| ||| | |||||||||||| || ||| | || || |||||||| || |||||||||||||| || |||||||||||||| |||| |
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|
| T |
5591025 |
tttgtgaatggcaggtttggaagttttttcaaatcacatatacttggctgccctacaatagtttcaatggatccagagcttaatagatacatattaatga |
5590926 |
T |
|
| Q |
258 |
atgaagcaaaagggtttgttccaggataccctcaatccatgttagatatcttaggaaaatgtaacattgcagctgttcatggctccactcacaagtacat |
357 |
Q |
| |
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||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
5590925 |
atgaatcaaaaggtcttgttcctggataccctcaatctatgttagatatcttaggaaaatgtaatattgcagcagttcatggctccactcacaagtacat |
5590826 |
T |
|
| Q |
358 |
gagagggacattgctttcaatcattag |
384 |
Q |
| |
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|||||| || | ||||| |||||||| |
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|
| T |
5590825 |
gagaggagcacttctttccatcattag |
5590799 |
T |
|
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