View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6564_low_4 (Length: 404)
Name: NF6564_low_4
Description: NF6564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6564_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3008623 - 3008405
Alignment:
| Q |
1 |
aaccctcctttcacaatgttagcagctaccaaatccaagtcagcatcttcaagaacaatgcaagcatcttttccaccaagctccatttgaagaggaacca |
100 |
Q |
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| T |
3008623 |
aaccctcctttcacaatgttagcagctaccaaatccaagtcagcatcttcaagaacaatgcaagcatcttttccaccaagctccatttgaagaggaacca |
3008524 |
T |
|
| Q |
101 |
ttgcagacttctttgatattgctattccagtgtctccaccagtgaaactaaggaaggattaatgtgaattagatcaaaaaatgttcacttgctacgataa |
200 |
Q |
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| T |
3008523 |
ttgcagacttctttgatattgctattccagtgtctccaccagtgaaactaaggaaggattaatgtgaattagatcaaaaaatgttcacttgctacgataa |
3008424 |
T |
|
| Q |
201 |
aacacctctctagtaagaa |
219 |
Q |
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||||||||||||||||||| |
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| T |
3008423 |
aacacctctctagtaagaa |
3008405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 282 - 391
Target Start/End: Complemental strand, 3008342 - 3008233
Alignment:
| Q |
282 |
cttgcttgagcctcttgttggaagttgtaactacaattgtcattttagttcttgagtgtgtgaggcggtgtcactataatccctgaacgtatcaaaatta |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3008342 |
cttgcttgagcctcttgttggaagttgtaactacaattgtcattttagttcttgagtgtgtgaggcggtgtcactataatccctgagcgtatcaaaatta |
3008243 |
T |
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| Q |
382 |
caaaaaacat |
391 |
Q |
| |
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|||||||||| |
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| T |
3008242 |
caaaaaacat |
3008233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 54726056 - 54726198
Alignment:
| Q |
4 |
cctcctttcacaatgttagcagctaccaaatccaagtcagcatcttcaagaacaatgcaagcatcttttccaccaagctccatttgaagaggaaccattg |
103 |
Q |
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| T |
54726056 |
cctccttttataatgtttgcagcaaccaaatcaaggtcagcatcttcaagtacaatgcaagcatcttttcctcccaattccatttgtaacggaatcatgc |
54726155 |
T |
|
| Q |
104 |
cagacttctttgatattgctattccagtgtctccaccagtgaa |
146 |
Q |
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| T |
54726156 |
ctgccttctttgaaattgcaatgccggtatctccaccagtgaa |
54726198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 387
Target Start/End: Original strand, 10765486 - 10765524
Alignment:
| Q |
349 |
gtgtcactataatccctgaacgtatcaaaattacaaaaa |
387 |
Q |
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| T |
10765486 |
gtgtcactataatccctgaatatatcaaaattacaaaaa |
10765524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 377
Target Start/End: Original strand, 8353705 - 8353761
Alignment:
| Q |
321 |
tcattttagttcttgagtgtgtgaggcggtgtcactataatccctgaacgtatcaaa |
377 |
Q |
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|||||||||| | | | ||||||| || |||||||||||||||||||||||||||| |
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| T |
8353705 |
tcattttagtccctaaatgtgtgaaacgatgtcactataatccctgaacgtatcaaa |
8353761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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