View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6564_low_5 (Length: 382)
Name: NF6564_low_5
Description: NF6564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6564_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 16856591 - 16856938
Alignment:
| Q |
16 |
atgtaggtatgtggggcaattttatgaatttaaattctctttgccttcataggacagaaatgggaaattagtactttgcagaggacaggttgtacttttc |
115 |
Q |
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| T |
16856591 |
atgtagataggtggggcaattttatgaatttaaattctctttgccttcataggacagaaatgggaaattagtactttgcagaggacaggttgtacttttc |
16856690 |
T |
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| Q |
116 |
ctgctaatggattgtcacatgccacgtgacatcttctttcttaagggtggcacgtgacatcattaataagcatagtctgcaattgcacaagtagaaagag |
215 |
Q |
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| T |
16856691 |
ctgcttatggattgtcacatgccacgtgacatcttctttcttaagggtggcacgtgacatctttaataagcatagtttgcaattgcataagtagaaagag |
16856790 |
T |
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| Q |
216 |
aaattggggaaagaaagggaaattacacttctttatattttt--cttttaattacttagtttagttgtataatactattaataaatctttcatagaattc |
313 |
Q |
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| T |
16856791 |
aaattggggaaa-aaagggaaattacacttctttatattttttccttttaattacttagtttagttgtataa---tattaataactctttcatagaatcc |
16856886 |
T |
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| Q |
314 |
aaaacaaatttgataagaaaaatatacaagtgacaaattaatatcttactgt |
365 |
Q |
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| T |
16856887 |
aaaacaaatttgataataaaaatatacaagtgacaaattaatatcttactgt |
16856938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 16867397 - 16867468
Alignment:
| Q |
79 |
gaaattagtactttgcagaggacaggttgtacttttcctgctaatggattgtcacatgccacgtgacatctt |
150 |
Q |
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| T |
16867397 |
gaaattagtactttgtagaggacaaattgtacttttcctgcttatggattgtcacatgccacgtgagatctt |
16867468 |
T |
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