View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6564_low_8 (Length: 299)
Name: NF6564_low_8
Description: NF6564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6564_low_8 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 3594719 - 3594430
Alignment:
| Q |
18 |
actgggaaagtcgaccgagccactgttgagaacgtatttaaccaataattttgttcttacaattcattttcaataattttaatacaactaacacaaaaat |
117 |
Q |
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| T |
3594719 |
actgggaaagtcgaccgagccactgttgagaacgtacgtaaccaatcattttcttcttacaattcattttcaataatttgtatacaactaacacaaaaat |
3594620 |
T |
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| Q |
118 |
tccctcaggcaattgatctcagaacgcgcatggctttatttaagatgatgaacaataatctgtttcagcatattaatggatgcatttcaactggaaaaga |
217 |
Q |
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| T |
3594619 |
tccctcaggcaattgatctcagaacgcgcatggctatatttaagatgatcaacaataatctgtttcagcatattaatggatgcatttcaactggaaaaga |
3594520 |
T |
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| Q |
218 |
agtatgct------------acacgtttcagttttctgtcattttgtcattacagttttataacatggacttgatgtgatg-atgtccat |
294 |
Q |
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| T |
3594519 |
agtatgcttttattttattcacacgtttcagttttctgtcatcttgtcattacagttttataacatggacttgatgtgatgcatgtccat |
3594430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 35714082 - 35714226
Alignment:
| Q |
79 |
attcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctcagaacgcgcatggctttatttaagatgatgaacaataatct |
178 |
Q |
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| T |
35714082 |
attcattttcaatattttgcatgcaactaacaataaaactctcctaggcaattgatcccagaacgcgcatggttttattcaagatgctcaatagaggtgt |
35714181 |
T |
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| Q |
179 |
gtttcagcatattaatggatgcatttcaactggaaaagaagtatg |
223 |
Q |
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| T |
35714182 |
gtttcaagatatgaatggatgcatttcaactggaaaggaagtatg |
35714226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 28934829 - 28934684
Alignment:
| Q |
78 |
aattcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctcagaacgcgcatggctttatttaagatgatgaacaataatc |
177 |
Q |
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| T |
28934829 |
aattcattctcaataattcttgtgcaactaacgctaaaaatcccctaggcaattgatcccagaacgcgcatggaaatatacaagatgatgaacaaacgtt |
28934730 |
T |
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| Q |
178 |
tgtttcagcatattaatggatgcatttcaactggaaaagaagtatg |
223 |
Q |
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| T |
28934729 |
ggtttcaagattccaatggatgcattttaactagaaaagaagtatg |
28934684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 28934427 - 28934396
Alignment:
| Q |
192 |
aatggatgcatttcaactggaaaagaagtatg |
223 |
Q |
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| T |
28934427 |
aatggatgcatttcaactggaaaagaagtatg |
28934396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 8491034 - 8490889
Alignment:
| Q |
78 |
aattcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctcagaacgcgcatggctttatttaagatgatgaacaataatc |
177 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8491034 |
aattcattttcaatcatttgaatacaactaacacaaaaattccctcaggcaattgatctcaggacgcgcatggctttatttaagatgatgaacaataatc |
8490935 |
T |
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| Q |
178 |
tgtttcagcatattaatggatgcatttcaactggaaaagaagtatg |
223 |
Q |
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| T |
8490934 |
tgtttcagcatattaatggatgcatttcaactggaaaagaagtatg |
8490889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 8490857 - 8490804
Alignment:
| Q |
230 |
gtttcagttttctgtcattttgtcattacagttt--tataacatggacttgatg |
281 |
Q |
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| T |
8490857 |
gtttcagttttctgtcatcttgtcattacagttttatataacatggacttgatg |
8490804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 5191 - 5108
Alignment:
| Q |
79 |
attcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctcagaacgcgcatggctttatttaaga |
162 |
Q |
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| T |
5191 |
attcattttcaataatttgtatgcaaacaacactaaaattcccctaggcaatggatcctagaacgcgcaaggctttattcaaga |
5108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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