View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6564_low_9 (Length: 295)
Name: NF6564_low_9
Description: NF6564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6564_low_9 |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 9231684 - 9231966
Alignment:
| Q |
1 |
tcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttga |
100 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9231684 |
tcggatagtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttga |
9231783 |
T |
|
| Q |
101 |
gatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaa |
200 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9231784 |
gatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaa |
9231883 |
T |
|
| Q |
201 |
ttgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat |
283 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9231884 |
tcgaagtcgatgtgcttttaaaaaagaggatatcaacgaacttctatgaaatggtttcagcggattccgccaattctcttgat |
9231966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 18351082 - 18350800
Alignment:
| Q |
1 |
tcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttga |
100 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18351082 |
tcggatagtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttga |
18350983 |
T |
|
| Q |
101 |
gatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaa |
200 |
Q |
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|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18350982 |
gatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaa |
18350883 |
T |
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| Q |
201 |
ttgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat |
283 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18350882 |
tcgaagtcgatgtgcttttaaaaaagaggatatcaacgaacttctatgaaatggtttcagcggattccgccaattctcttgat |
18350800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 16902484 - 16902202
Alignment:
| Q |
1 |
tcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttga |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
16902484 |
tcggatcgtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgagtataatttga |
16902385 |
T |
|
| Q |
101 |
gatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaa |
200 |
Q |
| |
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||||||| |||||| ||||||||||||||| || || |||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
16902384 |
gatactcggggttctccccttctgaatcatcacttctaggaagaacctacttaaaaaaatcataattacaggacctcaccgcttattgattattaaagaa |
16902285 |
T |
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| Q |
201 |
ttgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat |
283 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
16902284 |
tcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaggtggtttcagcagattccgccaattctcttgat |
16902202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 2914280 - 2914006
Alignment:
| Q |
9 |
taaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttgagatactca |
108 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2914280 |
taaatattttccagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttgagatactca |
2914181 |
T |
|
| Q |
109 |
tggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaattgaagtc |
208 |
Q |
| |
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||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2914180 |
tggttcttcccttatgaatcattaattccagtaaaaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaatcgaagtc |
2914081 |
T |
|
| Q |
209 |
gatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat |
283 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2914080 |
gatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat |
2914006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 6488771 - 6488489
Alignment:
| Q |
1 |
tcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttga |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
6488771 |
tcggatcgtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatattgattataaaacaaatacatcatatgtgactttaatttga |
6488672 |
T |
|
| Q |
101 |
gatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaa |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
6488671 |
gatactcatggttcttccattctgaatcatcaattctagtaagaacatacttaagaaaatcataagtacaggaccttaccgcatattgattattaaagaa |
6488572 |
T |
|
| Q |
201 |
ttgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat |
283 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6488571 |
tcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattttcttgat |
6488489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 18492928 - 18493007
Alignment:
| Q |
1 |
tcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacat |
80 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18492928 |
tcggatcgtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaattacat |
18493007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 17649958 - 17650239
Alignment:
| Q |
1 |
tcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttga |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
17649958 |
tcggatcgtaaatatttc-cagaaaaatctttctcagaatattgagtatgaatccaatatcaattataaaacaaatacatcatctgtgactttaatctga |
17650056 |
T |
|
| Q |
101 |
gatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
17650057 |
gatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatcatagttacatgaccttaccgcatattgattattaaagaa |
17650156 |
T |
|
| Q |
201 |
ttgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat |
283 |
Q |
| |
|
| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17650157 |
tcgaagttgatgtgcttttagaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat |
17650239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 20635497 - 20635723
Alignment:
| Q |
1 |
tcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttga |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
20635497 |
tcggatcgtaaatatttcccagaaaaatctttctcaaaatatttagtatgaatccaatatcgattatgaaacaaatacatcatc----actttaatttga |
20635592 |
T |
|
| Q |
101 |
gatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20635593 |
gatactcatggttcttcccttctgaatcatcaatttcagtaagaacatatttaagaaaatcataattacatgaccttaccgcatattgattattaaagaa |
20635692 |
T |
|
| Q |
201 |
ttgaagtcgatgtgcttttaaaaaagaggat |
231 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |
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| T |
20635693 |
tcgaagtcgatgtgcttttaaaaaagaggat |
20635723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 1096 - 1001
Alignment:
| Q |
188 |
gattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat |
283 |
Q |
| |
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||||||| |||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |
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| T |
1096 |
gattattcaagaatcgaagtcgatttgctttataaaaagaagatatcaatgaacttctatgaaatggtttcacgggattcagccaattgtcttgat |
1001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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