View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6566_low_1 (Length: 797)
Name: NF6566_low_1
Description: NF6566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6566_low_1 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 782
Target Start/End: Complemental strand, 2271973 - 2271216
Alignment:
| Q |
1 |
tgcgctactacgtggatcatctcgaaggaaaggaacaacataatttttcaaagcagagcctcctccgcctctaagcttctcgataatgttaaatttcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2271973 |
tgcgctactacgtggatcatctcgaagaaaaggaacaacataatttttcaaaagagagaatcctccgcctctaagcttctcgataatgttaaatttcttt |
2271874 |
T |
|
| Q |
101 |
ctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgttatatatgggcataggttcatagtctct |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2271873 |
ctttttagtggttaaagacaaattc----------------------catgggtgatgacttagccctttgttatatatgggcataggttg---gtctct |
2271799 |
T |
|
| Q |
201 |
tatctttgatttatgctcttttgtaactgatgatgtgactttttgagtctcatttccgacacaccttatgctaggaatagtgcagtttagctttaattta |
300 |
Q |
| |
|
||| |||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2271798 |
tatatttggtttatgctcttttgtaaccgatgatgtgactttttgagcctcatttccgacacaccttatgctaggaatagtgcagtttagttttaattta |
2271699 |
T |
|
| Q |
301 |
ttctattttgacttcttnnnnnnn-ttacctttttgttttcactttataattcaaaatatcaagagtcgcatccatattattccatcattcatgtgtttt |
399 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2271698 |
ttctattttgacttcttaaaaaaaattacctttttgttttcactttataattcaaaatatcaagagtcgcatccatattattccatcattcatgtgtttt |
2271599 |
T |
|
| Q |
400 |
tagttttggcctaaatatcgttttcnnnnnnnngttttggcctaaatatcatggtggctggtgccacctaaggtttaatttgtctccatatgtcttggag |
499 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2271598 |
tagttttggcctaaatatcgttttcaaaaaaaagttttggcctaaatatcatggtggctggtgccacctaaggtttaatttgtctccatatgtcttggag |
2271499 |
T |
|
| Q |
500 |
aaatttaggaaccgtaaaattcagtatatatgctaatgctattgtttttatctttttggacagaatatattctatagtagaactgctagagattataatt |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2271498 |
aaatttaggaaccgtaaaattcagtatatatgctaatgctattgtttttatctttttggacagaatatattctatagtagaactgctagagattataatt |
2271399 |
T |
|
| Q |
600 |
agattctgtacaaaagtattttgtaagtgtgttttattttgtatnnnnnnnncgacatagagaaactgatagcttacgttttttactatcctaagcagtg |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2271398 |
agattctgtacaaaagtattttgtaagtgtgttttattttgtataaaaaaaacgacatagagaaactgatagcttacgttttttactatcctaagcagtg |
2271299 |
T |
|
| Q |
700 |
atttccagcaggattttgattctacgtctaccaccgtaaataatattcttcaagaaaatatctttgcggtggatattttttct |
782 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2271298 |
atttccagcaggattttgattctacgtctaccaccgtaaataatattcttcaagaaaatatctttgcggtggatattttttct |
2271216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 32900416 - 32900528
Alignment:
| Q |
73 |
aagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgt |
172 |
Q |
| |
|
|||||||| ||||||| ||| ||||||| || | ||||| ||| | || || |||| |||||||||||||||||||||| | |||||||||||||| | |
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|
| T |
32900416 |
aagcttcttgataatggtaagcttctttcattctggtggtaaaaagctaactcaaaaaatattgcttttgattaccataggtggtggcttagccctttat |
32900515 |
T |
|
| Q |
173 |
tatatatgggcat |
185 |
Q |
| |
|
|| ||||||||| |
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|
| T |
32900516 |
catgtatgggcat |
32900528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 41238547 - 41238400
Alignment:
| Q |
24 |
gaaggaaaggaacaacataatttttcaaagcagagcctcctccgcctctaagcttctcgataatgttaaatttctttctttttagtggttaaagacaaat |
123 |
Q |
| |
|
|||||||| |||||||||||| ||||||| || ||||||||||| ||||||||||| |||||||||||| |||||||||||| || ||||||| |||| |
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|
| T |
41238547 |
gaaggaaatgaacaacataatatttcaaaacaaagcctcctccgtttctaagcttctagataatgttaaacttctttctttttggtagttaaaggcaaaa |
41238448 |
T |
|
| Q |
124 |
tccaaaattattgcttttgattaccataggggatggcttagccctttg |
171 |
Q |
| |
|
| ||||||||||| ||||||||| |||||| | |||| ||||||||| |
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| T |
41238447 |
tacaaaattattgtttttgattatcataggtggtggccaagccctttg |
41238400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 23787375 - 23787248
Alignment:
| Q |
46 |
tttcaaagcagagcctcctccgcctctaagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgatt |
145 |
Q |
| |
|
||||||| || || |||| |||| || |||||||| |||||| | || |||||||||||| ||||||||| |||| || ||||||| || |||||||| |
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|
| T |
23787375 |
tttcaaaacaaagtctcccccgcttcaaagcttctagataatataaagcttctttctttttgatggttaaaggcaaaatctaaaattactgtttttgatt |
23787276 |
T |
|
| Q |
146 |
accataggggatggcttagccctttgtt |
173 |
Q |
| |
|
| ||||| |||||| || | ||||||| |
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|
| T |
23787275 |
attataggtgatggcctaactctttgtt |
23787248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 12163090 - 12163204
Alignment:
| Q |
73 |
aagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgt |
172 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| | |||||||| | ||||| |
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|
| T |
12163090 |
aagcttattgataatgttaagcttctttctttttggtggttaaagacaaatttcaaaattattgcttttgattactgtaggtggtggcttagtcttttgt |
12163189 |
T |
|
| Q |
173 |
tatatatgggcatag |
187 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
12163190 |
tatgtatgggcatag |
12163204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 40613957 - 40614036
Alignment:
| Q |
84 |
taatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggctta |
163 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||| |||| | |||||||||| | ||||||| |||||| | ||||||| |
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|
| T |
40613957 |
taatgttaagtgtctttctttttggtggttaaaggcaaaatttaaaattattgttcttgattatcataggtggtggctta |
40614036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 22297 - 22179
Alignment:
| Q |
83 |
ataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgttatatatggg |
182 |
Q |
| |
|
||||||||||| |||||||||||| |||| |||| ||||||||||||| || ||||||||||||| | || ||||||||||||||||| | ||| || |
|
|
| T |
22297 |
ataatgttaaacttctttctttttggtggctaaatgcaaattccaaaatcatgacttttgattaccaaatagggtggcttagccctttgttgtgtatagg |
22198 |
T |
|
| Q |
183 |
cataggttcatagtctctt |
201 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
22197 |
aataggttgatagtctctt |
22179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 30545865 - 30545748
Alignment:
| Q |
46 |
tttcaaagcagagcctcctccgcctctaagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgatt |
145 |
Q |
| |
|
||||||| || |||||||||| ||| |||| ||| ||||||||||| || ||||||||| |||||||||| ||| || |||||||||| |||||||| |
|
|
| T |
30545865 |
tttcaaaacaaagcctcctccatctccaagcgtctagataatgttaatcttatttctttttggtggttaaagctaaaatctaaaattattgtttttgatt |
30545766 |
T |
|
| Q |
146 |
accataggggatggctta |
163 |
Q |
| |
|
| |||||| | ||||||| |
|
|
| T |
30545765 |
atcataggtggtggctta |
30545748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 9589754 - 9589706
Alignment:
| Q |
127 |
aaaattattgcttttgattaccataggggatggcttagccctttgttat |
175 |
Q |
| |
|
||||||||| ||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
9589754 |
aaaattattccttttgattaccataggtggtgtcttagccctttgttat |
9589706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 27889138 - 27889087
Alignment:
| Q |
139 |
tttgattaccataggggatggcttagccctttgttatatatgggcataggtt |
190 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| || | |||||||||||||| |
|
|
| T |
27889138 |
tttgattaccataggtgatgacttagccctttattgtgtatgggcataggtt |
27889087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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