View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6566_low_3 (Length: 362)
Name: NF6566_low_3
Description: NF6566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6566_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 7766967 - 7766629
Alignment:
| Q |
19 |
gcggtgacatggtgagtcctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaac |
118 |
Q |
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| T |
7766967 |
gcggcgacatggtgagtcctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaac |
7766868 |
T |
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| Q |
119 |
aattctggaccgatttcgtagtctcctcagccttgtgaacagcataatcttccaactcctgtacagaatcattctctgatccaccagattcacggagatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7766867 |
aattctggaccgatttcgtagtctcctcagccttgtgaacagcataatcttccaactcctgtacagaatcattctctgatccaccagattcacggagatt |
7766768 |
T |
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| Q |
219 |
ctttgaatttaacattatcactctttttgaagacattctcactcaagaagtgcagaatcaaggtgcagtgcgccagtgcggtccttaacgctgcggaagc |
318 |
Q |
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| T |
7766767 |
ctttgaatttaacattatcactctttttgaagacattctcactcaagaagtgcagaatcaaggtgcagtgcgccagtgcggtccttaacgctgcggaagc |
7766668 |
T |
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| Q |
319 |
acaacagtcccaacaagtaactagggtttttcttctcac |
357 |
Q |
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| T |
7766667 |
acaacagtcccaacaagtaactagggtttttcttttcac |
7766629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 45392557 - 45392712
Alignment:
| Q |
24 |
gacatggtgagtcctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaacaattc |
123 |
Q |
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| T |
45392557 |
gacatggtgactcctagtaatttgctcaccctggtgatgaagggtgaccaatgtcttggcagcatcctctcttatgttctctgctatcttcaaacaattg |
45392656 |
T |
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| Q |
124 |
tggaccgatttcgtagtctcctcagccttgtgaacagcataatcttccaactcctg |
179 |
Q |
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| T |
45392657 |
tgtaccgatttggtagtctcctcagccttgtaaacagcataattctccaactcctg |
45392712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 7216621 - 7216769
Alignment:
| Q |
30 |
gtgagtcctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggacc |
129 |
Q |
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|||| |||||||||| ||||| ||||| ||||| || |||| || ||||||||||||| |||| || | |||||||||||| |||||| | ||| |
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| T |
7216621 |
gtgactcctagtaatctgctcgccctgatgatgcagcatgaccaaagtcttggtagcatcttctcgcatttcctctgctatcttccgacaattgtttacc |
7216720 |
T |
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| Q |
130 |
gatttcgtagtctcctcagccttgtgaacagcataatcttccaactcct |
178 |
Q |
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| T |
7216721 |
gattttgtcgtctcttcagctttgtaaacagcatactcctccaaatcct |
7216769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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