View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6566_low_5 (Length: 289)
Name: NF6566_low_5
Description: NF6566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6566_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 47112737 - 47112949
Alignment:
| Q |
18 |
agtaacaaattttaaatcaagtcttcaaatctgcatttgatatatagcagctccaatgctcgaagctcatattcgttcttgccagcaataaagccttagg |
117 |
Q |
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| T |
47112737 |
agtaacaaattttaaatcaagtcttcaaatctgcatttgatatatagcagctccaattctcgaagctcatattcgttcttgccagcaataaagccttagg |
47112836 |
T |
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| Q |
118 |
gcataagagttgacaagctctctccaaaagtgtcagatcggttcaagagtaaggttactaaaatcatagttttaggtctattgataaaaaattatttgtc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
47112837 |
ccataagagttgacaagctctctccaaaagtgtcagatcggttcgagagtaaggttactaaaatcattgttttaggtctactgataaaaaattatttgtc |
47112936 |
T |
|
| Q |
218 |
attagtttttata |
230 |
Q |
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|||| |||||||| |
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| T |
47112937 |
attaatttttata |
47112949 |
T |
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