View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6566_low_6 (Length: 283)
Name: NF6566_low_6
Description: NF6566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6566_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 27216256 - 27216013
Alignment:
| Q |
18 |
ttctattggttgacaaagtcgacacaacaaagataatgccaacaaatgcctaatctaataataagcaatcaaaggaatatcttagtattcagcaagnnnn |
117 |
Q |
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| T |
27216256 |
ttctattggttgacaaagtcgacacaacaaagataatgccaacaaatgccaa-----------------caaaggaatatcttagtattcagcaagaaaa |
27216174 |
T |
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| Q |
118 |
nnnttgtcgacaaagagaagaaaaagcaactaatttatatagtattcggaaaataaatagaaaactaatttatatagtaatatattagtattacaaagat |
217 |
Q |
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| T |
27216173 |
aaattgtcgacaaagagaagaaaaagcaactaatttatatagtattcgtaaaataaatagaaaactaatttatatagtaatatattagtattacaaagat |
27216074 |
T |
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| Q |
218 |
cttataaaaaataaatattaggtttttaaagttaattttatagggtagaatatgatgatgt |
278 |
Q |
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| T |
27216073 |
cttagaaaaaataaatattaggtttttaaagttaattttatagggtagaatatgatgatgt |
27216013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 27222260 - 27222003
Alignment:
| Q |
10 |
catcatcattctattggttgacaaagtcgacacaacaaagataatgccaacaaatgcctaatctaa----taataagcaatcaaaggaatatcttagtat |
105 |
Q |
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| T |
27222260 |
catcattattctattggttgacaaagtcgacgcaacaaagataattcccaaaaatgcctaatctaataattaatacgcaatcaaaggaatatcgtagtat |
27222161 |
T |
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| Q |
106 |
tcagcaagnnnnnnnttgtcgacaaagagaag-aaaaagcaactaatttatatagtattcggaaaataaatagaaaactaatttatatagtaatatatta |
204 |
Q |
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| T |
27222160 |
tcagcaagaaaaaaattgccgacagaaagaagaaaaaaacaagtaatatatatagtattcgtaaaataaa---aaaa--tatttatatagtaatatatta |
27222066 |
T |
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| Q |
205 |
gtattacaaagatcttataaaaaataaatattaggtttttaaagttaattttatagggtagaatat |
270 |
Q |
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| T |
27222065 |
gtaatacaaagatcttataaaa---aaatattaggtttttaaagttaattttacagtgtacaatat |
27222003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 27210390 - 27210344
Alignment:
| Q |
51 |
taatgccaacaaatgcctaatctaa-taataagcaatcaaaggaata |
96 |
Q |
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| T |
27210390 |
taatgtcaacaaatgcctaatctaattaatacgcaatcaaaggaata |
27210344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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