View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6567_high_16 (Length: 430)

Name: NF6567_high_16
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6567_high_16
NF6567_high_16
[»] chr2 (18 HSPs)
chr2 (1-412)||(38320070-38320482)
chr2 (142-329)||(20142936-20143116)
chr2 (141-289)||(37714390-37714538)
chr2 (142-326)||(13716673-13716850)
chr2 (142-328)||(19945685-19945864)
chr2 (162-292)||(35457389-35457518)
chr2 (179-325)||(27007174-27007313)
chr2 (199-329)||(14131181-14131304)
chr2 (142-240)||(37899545-37899643)
chr2 (156-289)||(27407404-27407537)
chr2 (149-292)||(3167871-3168014)
chr2 (151-291)||(31645087-31645229)
chr2 (149-292)||(32976010-32976155)
chr2 (153-250)||(24183950-24184047)
chr2 (149-292)||(4434272-4434418)
chr2 (213-292)||(31845453-31845532)
chr2 (243-329)||(31264827-31264906)
chr2 (208-283)||(5881430-5881505)
[»] chr4 (17 HSPs)
chr4 (149-292)||(42504184-42504324)
chr4 (149-265)||(19482493-19482609)
chr4 (142-292)||(24060544-24060694)
chr4 (155-265)||(25817646-25817756)
chr4 (182-292)||(30220709-30220817)
chr4 (149-292)||(16528538-16528684)
chr4 (142-329)||(37762773-37762955)
chr4 (141-273)||(41545382-41545514)
chr4 (159-292)||(5288507-5288640)
chr4 (145-285)||(51304296-51304435)
chr4 (179-265)||(29065295-29065381)
chr4 (142-265)||(2765385-2765505)
chr4 (142-219)||(13218424-13218500)
chr4 (229-329)||(19663341-19663430)
chr4 (153-254)||(41485716-41485817)
chr4 (151-217)||(42108751-42108817)
chr4 (179-235)||(35364652-35364708)
[»] chr6 (8 HSPs)
chr6 (149-329)||(32871712-32871886)
chr6 (142-292)||(2130482-2130632)
chr6 (142-292)||(6784692-6784842)
chr6 (142-329)||(34713469-34713649)
chr6 (142-292)||(28867153-28867303)
chr6 (210-329)||(3855696-3855807)
chr6 (167-271)||(6519233-6519337)
chr6 (149-292)||(11301811-11301954)
[»] chr1 (15 HSPs)
chr1 (149-292)||(35413001-35413144)
chr1 (151-292)||(10061569-10061710)
chr1 (150-329)||(29657340-29657512)
chr1 (142-292)||(43537135-43537288)
chr1 (142-287)||(21540042-21540187)
chr1 (151-328)||(35149625-35149795)
chr1 (166-280)||(11470016-11470130)
chr1 (157-292)||(26469927-26470062)
chr1 (142-281)||(23906607-23906746)
chr1 (142-329)||(48852611-48852791)
chr1 (229-292)||(9113450-9113514)
chr1 (142-254)||(49313575-49313687)
chr1 (206-271)||(33077719-33077784)
chr1 (155-264)||(47996658-47996767)
chr1 (224-292)||(4684518-4684586)
[»] chr5 (11 HSPs)
chr5 (142-292)||(3040250-3040400)
chr5 (142-328)||(30735282-30735461)
chr5 (142-292)||(40519147-40519296)
chr5 (142-291)||(25493787-25493936)
chr5 (142-292)||(30071739-30071889)
chr5 (150-289)||(30700863-30701000)
chr5 (143-334)||(24402009-24402198)
chr5 (196-329)||(34280066-34280192)
chr5 (201-275)||(7547293-7547366)
chr5 (151-258)||(21259195-21259301)
chr5 (223-292)||(20359962-20360031)
[»] chr7 (13 HSPs)
chr7 (142-293)||(21882758-21882909)
chr7 (179-289)||(46413736-46413849)
chr7 (150-292)||(23611740-23611881)
chr7 (150-272)||(46297589-46297711)
chr7 (151-292)||(22631457-22631598)
chr7 (200-292)||(1985032-1985124)
chr7 (149-291)||(23730497-23730636)
chr7 (142-291)||(8123659-8123808)
chr7 (150-292)||(20125566-20125708)
chr7 (142-254)||(24250482-24250594)
chr7 (151-289)||(19511387-19511525)
chr7 (162-281)||(44600996-44601107)
chr7 (178-219)||(15127637-15127678)
[»] chr3 (12 HSPs)
chr3 (149-329)||(1632784-1632956)
chr3 (179-292)||(26442954-26443067)
chr3 (179-328)||(18271924-18272066)
chr3 (140-291)||(34905812-34905963)
chr3 (142-292)||(45852924-45853074)
chr3 (166-292)||(2671895-2672021)
chr3 (150-292)||(40840639-40840780)
chr3 (182-290)||(1713970-1714078)
chr3 (151-292)||(10593451-10593591)
chr3 (142-287)||(48897675-48897820)
chr3 (196-292)||(31192081-31192177)
chr3 (149-258)||(3169272-3169379)
[»] chr8 (12 HSPs)
chr8 (201-292)||(5718437-5718528)
chr8 (142-292)||(29414352-29414500)
chr8 (151-292)||(38585078-38585219)
chr8 (204-331)||(25124400-25124520)
chr8 (196-292)||(5686280-5686376)
chr8 (179-288)||(26415557-26415666)
chr8 (138-292)||(33543314-33543465)
chr8 (142-218)||(29543676-29543752)
chr8 (141-258)||(24068141-24068257)
chr8 (142-278)||(36947229-36947367)
chr8 (144-257)||(35393710-35393823)
chr8 (179-292)||(43063842-43063955)
[»] scaffold0018 (1 HSPs)
scaffold0018 (151-258)||(69949-70056)
[»] scaffold0122 (1 HSPs)
scaffold0122 (142-278)||(18602-18738)
[»] scaffold0194 (1 HSPs)
scaffold0194 (211-329)||(27069-27180)
[»] scaffold0247 (1 HSPs)
scaffold0247 (204-292)||(19220-19308)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 38320482 - 38320070
Alignment:
Q  1 cagaaatgatatttggacagtgacactacaga-tatatgacagtttgatgtactatgcttattaatatattctttatcaaatatggcactatctcatact 99  Q
    |||||||||||||||||||||||||||||| | |||||||  |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  38320482 cagaaatgatatttggacagtgacactacaaaatatatgatggtttgatgtactatgcttataaatttattctttatcaaatatggcactatctcatact 38320383  T
Q  100 catcttaagcgtgagttcaattttagtttaacattatcaatcgagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||    
T  38320382 catcttaagcgtgagttcaattttagtttaacattatcaatcgagcatcgttatttatctagagagtttttatcaagaatttatcaagaaaagttttcaa 38320283  T
Q  200 ccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttctt 299  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38320282 ccaattaaatttgttatttggtggaaatcaaaggaggtaatgatgtgtaaataaggaaatgtgttatcaaatacactgtcttaaaattttcttttttctt 38320183  T
Q  300 gataaattttgccactgtatctatcatttcgcttatcaattagtaggttatacgtgaactccgttgtatatttaagtgtgagttcaattttagttttaaa 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  38320182 gataaattttgccactgtatctatcatttcgcttatcaattagtaggttatacgtgaactccattgtatatttaagtgtgagttcaattttagtttaaaa 38320083  T
Q  400 ctagtaaaagatc 412  Q
    |||||||||||||    
T  38320082 ctagtaaaagatc 38320070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 142 - 329
Target Start/End: Original strand, 20142936 - 20143116
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| | |||||||||||||||||||||| || |||||||||||||||  | |||||||||||||||| |||||||| ||||||||||| ||||||||    
T  20142936 gagcattgttatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatg 20143035  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcatttc 329  Q
    ||||||||||||||||| ||||||  ||||||||| |||| |||       |||||||||||||||||| ||||||||||||||||||    
T  20143036 atgtgtaattaaggaaaggtgttagaaaatacactatcttgaaa-------ttttcttgataaattttgtcactgtatctatcatttc 20143116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 141 - 289
Target Start/End: Original strand, 37714390 - 37714538
Alignment:
Q  141 cgagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaat 240  Q
    ||||||| |||||||||||||||||||||||| ||  ||||||||||||||| | |||||||||||||||||||||||| |||||||||| |||| ||||    
T  37714390 cgagcattgctatttatctagagagtttttatcaatgatttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataat 37714489  T
Q  241 gatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaatttt 289  Q
    | |||||||||||||||| |||||| ||||||||||| |||||||||||    
T  37714490 ggtgtgtaattaaggaaaggtgttagcaaatacactgccttaaaatttt 37714538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 142 - 326
Target Start/End: Complemental strand, 13716850 - 13716673
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| |||||||||||||||||||||||| || |||||||||||||||  | |||||||||||||||||| |||||| | ||||||| |||||||||     
T  13716850 gagcattgctatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttgtgatttggcgaaaatcaaaggaggtaata 13716751  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcat 326  Q
     |||||||||||| ||| |||||| |||||||||||| || |||       |||||||||||||||||| |||||||||||||||    
T  13716750 gtgtgtaattaagaaaaggtgttagcaaatacactgttttgaaa-------ttttcttgataaattttgtcactgtatctatcat 13716673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 142 - 328
Target Start/End: Complemental strand, 19945864 - 19945685
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| ||||||||| ||||||||||||||||| ||||||| || ||||  | ||   |||||||||||||||||||  |||||| |||||||||||||    
T  19945864 gagcattgctatttatttagagagtttttattaagaatttattaaaaaaatgtctcggtcaattaaatttgttatttgacggaaattaagggaggtaatg 19945765  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcattt 328  Q
     ||||||||||||||||  | ||| ||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||    
T  19945764 gtgtgtaattaaggaaagatattaacaaatacactgtcttaaaattt-------tcttgataaattttgtcactgtatctatcattt 19945685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 162 - 292
Target Start/End: Original strand, 35457389 - 35457518
Alignment:
Q  162 agagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgt 261  Q
    ||||||||||| || ||||||| |||||||| |||||| ||||||||||| |||||| | ||||||||| |||||||||| |||||||||||||||||||    
T  35457389 agagtttttatcaagaatttat-aagaaaaggtttcaatcaattaaatttattatttagcggaaatcaaaggaggtaatggtgtgtaattaaggaaatgt 35457487  T
Q  262 gttatcaaatacactgtcttaaaattttctt 292  Q
    |||| |||||| ||| |||||||||||||||    
T  35457488 gttaacaaatatactatcttaaaattttctt 35457518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 179 - 325
Target Start/End: Original strand, 27007174 - 27007313
Alignment:
Q  179 tttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgt 278  Q
    ||||||||||||   | |||||||| |||||||||||||||| |||||||||||||||||||  |||||| ||||||||| |||||| ||||||||||||    
T  27007174 tttatcaagaaattgtctcaaccaaataaatttgttatttggcggaaatcaagggaggtaatagtgtgtatttaaggaaaagtgttaacaaatacactgt 27007273  T
Q  279 cttaaaattttcttttttcttgataaattttgccactgtatctatca 325  Q
    |||||||       |||||||||||||||||| ||||||||||||||    
T  27007274 cttaaaa-------ttttcttgataaattttgtcactgtatctatca 27007313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 14131181 - 14131304
Alignment:
Q  199 accaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttct 298  Q
    ||||||||||| |||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||| ||||||||       ||||||    
T  14131181 accaattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaaggaaatgtgttagcaaatacactatcttaaaa-------ttttct 14131273  T
Q  299 tgataaattttgccactgtatctatcatttc 329  Q
    | |||||||||| ||||||||||||||||||    
T  14131274 tcataaattttgtcactgtatctatcatttc 14131304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 37899643 - 37899545
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaat 240  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||  | ||||||| |||||||||    
T  37899643 gagcattgctatttatctagagagtttttatcaaaaatttatcaagaaaaggtttcaaccaattaaatttgtgatttgtcgaaaatcaaaggaggtaat 37899545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 27407404 - 27407537
Alignment:
Q  156 atctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaagg 255  Q
    ||||||||||| ||||| || |||| ||||||||||| | ||| |||||||||||||||||||   ||||||||||| || ||||| |||||||||||||    
T  27407404 atctagagagtgtttatcaagaattgatcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaagg 27407503  T
Q  256 aaatgtgttatcaaatacactgtcttaaaatttt 289  Q
    |||||| ||| |||||||| | ||||||||||||    
T  27407504 aaatgtattagcaaatacagtatcttaaaatttt 27407537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 3167871 - 3168014
Alignment:
Q  149 gctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgta 248  Q
    ||||||||| || | |||||||||||| ||||| | |||||||| | |||||||||||||||| |||||||  ||||||||| | |||||||||||||||    
T  3167871 gctatttatttaaaaagtttttattaagaatttgttaagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgatgtgta 3167970  T
Q  249 attaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||||| |||| |||||| |||||| ||| | | |||||||||||    
T  3167971 attaaagaaaggtgttagcaaatatactatttaaaaattttctt 3168014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 151 - 291
Target Start/End: Complemental strand, 31645229 - 31645087
Alignment:
Q  151 tatttatctagagagtttttattaaaaatttatcaagaaaagttt-tcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaa 249  Q
    |||||||||||||||||||||| || |||||||||| |||| | | | |||||||||||||| | |||||| ||||||||||  | ||||||||||||||    
T  31645229 tatttatctagagagtttttatcaagaatttatcaaaaaaaatgtcttaaccaattaaatttttaatttggcggaaatcaagaaacgtaatgatgtgtaa 31645130  T
Q  250 ttaaggaaa-tgtgttatcaaatacactgtcttaaaattttct 291  Q
    ||||| |||  |||||| |||||||| | ||||||||||||||    
T  31645129 ttaagaaaagggtgttagcaaatacattctcttaaaattttct 31645087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 149 - 292
Target Start/End: Complemental strand, 32976155 - 32976010
Alignment:
Q  149 gctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggt--aatgatgtg 246  Q
    ||||||||||||||||| |||||| || |||| ||||||||||  | ||||||||||||||||||||||||  ||||||||| | ||||  |||| | ||    
T  32976155 gctatttatctagagagattttatcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaagaaggtaaaatggtatg 32976056  T
Q  247 taattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    |||||||| ||| ||||||  ||||||||||| || ||||||||||    
T  32976055 taattaagaaaaggtgttagtaaatacactgttttgaaattttctt 32976010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 24183950 - 24184047
Alignment:
Q  153 tttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaat 250  Q
    ||||| ||||||||||||||| | |||||||||||||||| ||||| |||||||||||| |||||||  |||| ||||  ||||||||| ||||||||    
T  24183950 tttatttagagagtttttattcataatttatcaagaaaaggtttcagccaattaaatttattatttgccggaactcaatagaggtaatggtgtgtaat 24184047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 4434272 - 4434418
Alignment:
Q  149 gctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggagg---taatgatgt 245  Q
    |||||||||  |||||| ||||||||| |||| ||||||||||| |  ||  |||||||||||||||||||  | |||||||||||||   ||||| |||    
T  4434272 gctatttattgagagagattttattaagaattgatcaagaaaaggtcccagtcaattaaatttgttatttgccgaaaatcaagggaggaggtaatggtgt 4434371  T
Q  246 gtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||||||||| |||||||||  |||||| | ||| || ||||||||||    
T  4434372 gtaattaagtaaatgtgttggcaaatatattgttttgaaattttctt 4434418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 31845453 - 31845532
Alignment:
Q  213 ttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    |||||||  |||||||||| ||||||||| ||||||||||||| ||  ||||| |||||||||||||| |||||||||||    
T  31845453 ttatttgtcggaaatcaagagaggtaatggtgtgtaattaaggtaagatgttagcaaatacactgtctaaaaattttctt 31845532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 329
Target Start/End: Original strand, 31264827 - 31264906
Alignment:
Q  243 tgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcatttc 329  Q
    |||||||||||||||| |||||| |||||||||| ||||||||       |||  ||||||||||||| ||||||||||||||||||    
T  31264827 tgtgtaattaaggaaaagtgttagcaaatacactatcttaaaa-------tttgtttgataaattttgtcactgtatctatcatttc 31264906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 5881505 - 5881430
Alignment:
Q  208 atttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaa 283  Q
    |||||||||||   ||||||||||| | ||||||||||||||||||||||| || ||| |||||| ||||| ||||    
T  5881505 atttgttatttaccggaaatcaaggaatgtaatgatgtgtaattaaggaaaggtattagcaaatatactgtattaa 5881430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 149 - 292
Target Start/End: Complemental strand, 42504324 - 42504184
Alignment:
Q  149 gctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgta 248  Q
    |||||||||||||||||||||||| ||   || ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  42504324 gctatttatctagagagtttttatgaa---ttgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatgtgta 42504228  T
Q  249 attaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    |||||||||| |||||| ||||||||||||||||||||||||||    
T  42504227 attaaggaaaggtgttaacaaatacactgtcttaaaattttctt 42504184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 19482493 - 19482609
Alignment:
Q  149 gctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgta 248  Q
    |||||||||||||||||||||  |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||    
T  19482493 gctatttatctagagagttttatttaagaatttatcaagaaaatttttcaaccaattaaatttgttatttggcggaaatcaagggaagtaatggtgtgta 19482592  T
Q  249 attaaggaaatgtgtta 265  Q
    |||||||||| ||||||    
T  19482593 attaaggaaaggtgtta 19482609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 142 - 292
Target Start/End: Original strand, 24060544 - 24060694
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| | |||||||||| ||| ||||||| || |||| ||||||||||  | | | | |||||||||||||||| | | ||||||||||||| |||||    
T  24060544 gagcattgttatttatctaaagaatttttatcaagaattgatcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataatg 24060643  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
     ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  24060644 gtgtgtaattaaggaaatgtgttagcaaatacactgttttaaaattttctt 24060694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 25817646 - 25817756
Alignment:
Q  155 tatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaag 254  Q
    ||||||||||  |||||| || |||| ||||||||||| | ||| ||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||    
T  25817646 tatctagagacattttatcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaattaag 25817745  T
Q  255 gaaatgtgtta 265  Q
     ||||||||||    
T  25817746 aaaatgtgtta 25817756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 182 - 292
Target Start/End: Original strand, 30220709 - 30220817
Alignment:
Q  182 atcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtctt 281  Q
    ||||||||||| ||||| |||||||| ||||||||| |  |||||||||||||| || || |||||||||||||||| |||||| |||||||||||||||    
T  30220709 atcaagaaaaggtttca-ccaattaattttgttattggccggaaatcaagggag-tattggtgtgtaattaaggaaaagtgttagcaaatacactgtctt 30220806  T
Q  282 aaaattttctt 292  Q
    |||||||||||    
T  30220807 aaaattttctt 30220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 16528538 - 16528684
Alignment:
Q  149 gctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggta---atgatgt 245  Q
    ||||||||||||||||| ||||||| | |||| ||||| | ||| | ||| ||||||||||||||||||||  |||||||||  ||  ||   ||| |||    
T  16528538 gctatttatctagagagattttatttagaattgatcaatagaaggtctcagccaattaaatttgttatttgtcggaaatcaaatgatatattaatggtgt 16528637  T
Q  246 gtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||||    
T  16528638 gtaattaaagaaatgtgttaacaaatacactatcttaaaattttctt 16528684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 329
Target Start/End: Original strand, 37762773 - 37762955
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttca--accaattaaatttgttatttggtggaaatcaagggaggtaa 239  Q
    |||||| |||||||||||| |||||||| || || |||||||||||||||     ||  |||||||||||||||||||||  | || |||| |||  |||    
T  37762773 gagcattgctatttatctaaagagttttcatcaagaatttatcaagaaaatgccacacaaccaattaaatttgttatttgacgaaagtcaaaggaaataa 37762872  T
Q  240 tgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcatttc 329  Q
    ||||||||||||||||||| |||||| |||||||| |||||| |||       |||| ||||||||||||| |||| |||||||||||||    
T  37762873 tgatgtgtaattaaggaaaagtgttaacaaatacattgtcttgaaa-------tttttttgataaattttgtcactctatctatcatttc 37762955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 141 - 273
Target Start/End: Original strand, 41545382 - 41545514
Alignment:
Q  141 cgagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaat 240  Q
    |||||||  |||||||||||||||||||  || || ||||||||||||||||   |||||||||||||||||||||||||  |||||| | | |||||||    
T  41545382 cgagcattactatttatctagagagtttccatcaagaatttatcaagaaaaggcctcaaccaattaaatttgttatttggcagaaatcgaagaaggtaat 41545481  T
Q  241 gatgtgtaattaaggaaatgtgttatcaaatac 273  Q
      ||||||||||| |||| |||||| |||||||    
T  41545482 tgtgtgtaattaatgaaaggtgttagcaaatac 41545514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 159 - 292
Target Start/End: Original strand, 5288507 - 5288640
Alignment:
Q  159 tagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaa 258  Q
    ||||||| ||||||||| |||| || |||||||  | ||| ||||||||||||||||||||  | |||||||||||| ||||| |||||||||||  |||    
T  5288507 tagagagattttattaagaattgattaagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaattaaaaaaa 5288606  T
Q  259 tgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||||||| |||||| || ||||| ||| ||||||    
T  5288607 tgtgttagcaaatataccgtcttgaaactttctt 5288640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 285
Target Start/End: Complemental strand, 51304435 - 51304296
Alignment:
Q  145 catcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatg 244  Q
    ||||| ||||||||||||||||||||||||| ||| ||| |||||||  |  ||| |||||||||||||||||||  ||||||||| |||| |||||  |    
T  51304435 catcgttatttatctagagagtttttattaagaatatat-aagaaaatatcacaatcaattaaatttgttatttgacggaaatcaaaggagataatggcg 51304337  T
Q  245 tgtaattaaggaaatgtgttatcaaatacactgtcttaaaa 285  Q
    || ||||||  |||| ||||| |||||||| ||||||||||    
T  51304336 tgcaattaaaaaaatatgttagcaaatacattgtcttaaaa 51304296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 29065381 - 29065295
Alignment:
Q  179 tttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgtta 265  Q
    |||||||||||||  | |||| |||||||||||||||||||  ||||||||| |||||||||| ||||||||||| |||| ||||||    
T  29065381 tttatcaagaaaaagtctcaatcaattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgtta 29065295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 2765505 - 2765385
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| |||||||||   ||||||||||||||| | || ||||||||||| | | | |||||||||||||||||| |    |||||| ||||| |||||    
T  2765505 gagcattgctatttat---gagagtttttattaagagttgatcaagaaaaggtctaagccaattaaatttgttattggccaaaaatcatgggagataatg 2765409  T
Q  242 atgtgtaattaaggaaatgtgtta 265  Q
    |||||||||||| |||| ||||||    
T  2765408 atgtgtaattaatgaaaggtgtta 2765385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 13218424 - 13218500
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttg 219  Q
    |||||| ||||||||| | ||||||||||||||||||||||| |||||||| | ||   |||||||||||||||||||    
T  13218424 gagcattgctatttattt-gagagtttttattaaaaatttattaagaaaaggtctcggtcaattaaatttgttatttg 13218500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 19663341 - 19663430
Alignment:
Q  229 aagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcattt 328  Q
    |||||||||||||||||||||||||| ||| ||     |||||||||| ||||||||||||       |||||||||||||| |||||||||||||||||    
T  19663341 aagggaggtaatgatgtgtaattaagaaaaggta----caaatacactctcttaaaatttt-------cttgataaattttgtcactgtatctatcattt 19663429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 41485716 - 41485817
Alignment:
Q  153 tttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaatta 252  Q
    |||||||||||||||||||| || |||| ||||||||||| ||| | ||||||||||||  |  | |  |||||| |||||||||||||  |||||||||    
T  41485716 tttatctagagagtttttatcaagaattgatcaagaaaaggtttaagccaattaaattttctgctggcaggaaattaagggaggtaatggggtgtaatta 41485815  T
Q  253 ag 254  Q
    ||    
T  41485816 ag 41485817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 42108817 - 42108751
Alignment:
Q  151 tatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatt 217  Q
    |||||||||||| | ||||||| || |||| ||||||||||  ||||| ||||||||||||||||||    
T  42108817 tatttatctagaaattttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatt 42108751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 35364652 - 35364708
Alignment:
Q  179 tttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggag 235  Q
    |||||||| ||||| ||| | ||||||||||||||||||   |||||||||||||||    
T  35364652 tttatcaaaaaaaggtttgacccaattaaatttgttattgactggaaatcaagggag 35364708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 149 - 329
Target Start/End: Complemental strand, 32871886 - 32871712
Alignment:
Q  149 gctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgta 248  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||  ||||||    
T  32871886 gctatttatctagagagtttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgta 32871787  T
Q  249 attaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcatttc 329  Q
    ||||||||||  |||||  ||||||||||||||| ||       |||||||||||||||||| || |||||||||||||||    
T  32871786 attaaggaaaaatgttagtaaatacactgtcttagaa------attttcttgataaattttgtcattgtatctatcatttc 32871712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 142 - 292
Target Start/End: Complemental strand, 2130632 - 2130482
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| | ||||||||||||||||||| || ||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||| |||||| ||     
T  2130632 gagcattgttatttatctagagagttttaataaaaaatttatcaagaaaaaatctcaaccaattaaatttgttatttggcggaaatcaaaggaggtgatt 2130533  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
     |||||||||||||||| |||||| ||||||||| || || ||||||||||    
T  2130532 gtgtgtaattaaggaaaggtgttagcaaatacaccgttttgaaattttctt 2130482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 142 - 292
Target Start/End: Complemental strand, 6784842 - 6784692
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| |||||||||||||||||||||||| || |||||||||| ||||| | ||| ||||||||||||||||||||  |||||||||||||| |||||    
T  6784842 gagcattgctatttatctagagagtttttatcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatg 6784743  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
     |||||||||||| ||| |||||| |||||||||| |||  ||||||||||    
T  6784742 gtgtgtaattaagaaaaggtgttagcaaatacactatctcgaaattttctt 6784692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 142 - 329
Target Start/End: Original strand, 34713469 - 34713649
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| |||||||||  ||||||||||||| || ||||||||||||||   | ||||| ||||||||||||||||||| | ||||||||||| ||||||    
T  34713469 gagcattgctatttattcagagagtttttatcaagaatttatcaagaaattgtctcaactaattaaatttgttatttggcgaaaatcaagggatgtaatg 34713568  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcatttc 329  Q
     |||||| ||||| ||| |||||| |||||||||| ||||||||       |||||||||||||||||| ||||||||||||||||||    
T  34713569 gtgtgtatttaagaaaaggtgttaacaaatacactatcttaaaa-------ttttcttgataaattttgtcactgtatctatcatttc 34713649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 142 - 292
Target Start/End: Original strand, 28867153 - 28867303
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| | |||||||||| |||| |||||| || |||| || |||||||  |||||| ||||||||||||||||||| |||||||||| |||||||||     
T  28867153 gagcattgttatttatctaaagagattttatcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaaggaggtaata 28867252  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
     | ||||||||||||||||| ||| |||||||| |||||| ||||||||||    
T  28867253 gtatgtaattaaggaaatgttttagcaaatacattgtcttgaaattttctt 28867303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 329
Target Start/End: Complemental strand, 3855807 - 3855696
Alignment:
Q  210 ttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaatttt 309  Q
    ||||||||||  |||||| |||||| ||||| ||||||||||||||||| |||||| | ||||||||||||| |||       |||||||||||||||||    
T  3855807 ttgttatttgacggaaattaagggatgtaataatgtgtaattaaggaaaggtgttagc-aatacactgtcttgaaa-------ttttcttgataaatttt 3855716  T
Q  310 gccactgtatctatcatttc 329  Q
    | ||||||||||||||||||    
T  3855715 gtcactgtatctatcatttc 3855696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 271
Target Start/End: Original strand, 6519233 - 6519337
Alignment:
Q  167 ttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttat 266  Q
    |||||| ||||||| ||||||||||  | |||  |||||||||||||||||||  | ||||||| ||| ||||||||||||||||||| ||||| ||||     
T  6519233 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaagaaaatgagttag 6519332  T
Q  267 caaat 271  Q
    |||||    
T  6519333 caaat 6519337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 11301811 - 11301954
Alignment:
Q  149 gctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgta 248  Q
    ||||||||| |||||| ||||||| || |||| |||| |||||| | |||  ||||| ||||||||||||   | ||||||||  |||||||  | | ||    
T  11301811 gctatttatatagagaatttttatcaagaattgatcatgaaaaggtctcagtcaattgaatttgttatttctcgaaaatcaagcaaggtaatagtatata 11301910  T
Q  249 attaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||||||||||  |||||  ||||||||| | |||||||||||||    
T  11301911 attaaggaaagatgttaggaaatacactattttaaaattttctt 11301954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 35413001 - 35413144
Alignment:
Q  149 gctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgta 248  Q
    |||||||||||||||||||||||| || |||||||||||||||| | ||||||||||||||||||||||||  |||||||||||||||||||  ||||||    
T  35413001 gctatttatctagagagtttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgta 35413100  T
Q  249 attaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    |||||||||| |||||| |||||||||| |||| ||||||||||    
T  35413101 attaaggaaaggtgttaacaaatacactctcttgaaattttctt 35413144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 151 - 292
Target Start/End: Original strand, 10061569 - 10061710
Alignment:
Q  151 tatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaat 250  Q
    |||||||||||||||||||||| || |||||||||| ||||  | ||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  10061569 tatttatctagagagtttttatcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtgtaat 10061668  T
Q  251 taaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||||||||||||||| |||||| |||||||| ||||||||||    
T  10061669 taaggaaatgtgttagcaaataaactgtcttgaaattttctt 10061710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 150 - 329
Target Start/End: Original strand, 29657340 - 29657512
Alignment:
Q  150 ctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaa 249  Q
    |||||||||||||||| |||||| |||||||  |||||||||| | ||||||||||||||||||||||||  | ||||||| |||||||||||| |||||    
T  29657340 ctatttatctagagagattttatcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaatgatatgtaa 29657439  T
Q  250 ttaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcatttc 329  Q
    ||||||||| |||||| ||||||||||||||| |||       ||||||||||||| |||| ||||||||||||||||||    
T  29657440 ttaaggaaaggtgttagcaaatacactgtcttgaaa-------ttttcttgataaaatttgtcactgtatctatcatttc 29657512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 142 - 292
Target Start/End: Complemental strand, 43537288 - 43537135
Alignment:
Q  142 gagcatcgctatttatctagagagtttttatta---aaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggta 238  Q
    |||||| | |||||||||||||||||||| |||   | |||| ||||||||||| | ||| ||||||||||||||||||||  |||||||||||||||||    
T  43537288 gagcattgttatttatctagagagttttttttatcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggaggta 43537189  T
Q  239 atgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  43537188 atggtgtgtaattaaagaaatgtgttaacaaatacactgtcttgaaattttctt 43537135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 142 - 287
Target Start/End: Original strand, 21540042 - 21540187
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| ||||||||| |||||||||||||| || || ||||||||||||  | ||| ||||||||||||||||||||| |||||| ||||||| |||||    
T  21540042 gagcattgctatttatttagagagtttttatcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaagggagataatg 21540141  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaatt 287  Q
    | |||||||||| |||| |||||| ||||||||||||||| |||||    
T  21540142 aagtgtaattaaagaaaggtgttaacaaatacactgtcttgaaatt 21540187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 151 - 328
Target Start/End: Complemental strand, 35149795 - 35149625
Alignment:
Q  151 tatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaat 250  Q
    |||||||||||||||||||||| || |||||||||||||||  | | ||||||||||||||||||||||    |||||||||||| ||||||||| ||||    
T  35149795 tatttatctagagagtttttatcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataat 35149696  T
Q  251 taaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcattt 328  Q
    |||||||| |||||| |||||||| | |||| |||       |||| ||||||||||||| ||||||| |||||||||    
T  35149695 taaggaaaggtgttagcaaatacattctcttgaaa-------tttttttgataaattttgtcactgtacctatcattt 35149625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 11470016 - 11470130
Alignment:
Q  166 tttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgtta 265  Q
    |||||||||| |||||||||||||||  | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  11470016 tttttattaagaatttatcaagaaaatatcttaaccaattaaatttgttatttggcggaaatcaagggaggtaatgatgtgtaattaagaaaatatgtta 11470115  T
Q  266 tcaaatacactgtct 280  Q
      ||||||| |||||    
T  11470116 agaaatacattgtct 11470130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 292
Target Start/End: Original strand, 26469927 - 26470062
Alignment:
Q  157 tctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaagga 256  Q
    |||||||||||||||| || |||||||||||||||  | ||||| |||||||||| ||||||  || ||||||| | || ||||| ||||||||||||||    
T  26469927 tctagagagtttttatcaagaatttatcaagaaaatgtctcaacaaattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaattaagga 26470026  T
Q  257 aatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    || |||||| |||||||||||| |||||||||||||    
T  26470027 aaggtgttagcaaatacactgttttaaaattttctt 26470062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 142 - 281
Target Start/End: Complemental strand, 23906746 - 23906607
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| |||||||||||||| || |||||| || |||| ||||||||||  ||||| ||||||||||||||||||||    |||||||| |||||||||    
T  23906746 gagcattgctatttatctagaaaggttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatttgccacaaatcaagagaggtaatg 23906647  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtctt 281  Q
     ||||||||||| |||| |||||| |||||||| ||||||    
T  23906646 gtgtgtaattaaagaaaggtgttagcaaatacattgtctt 23906607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 329
Target Start/End: Original strand, 48852611 - 48852791
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| | ||||||||||||||||||||||||| |||||||||| ||||  ||| || |||||||||||||||||| |   ||||||| | || |||||    
T  48852611 gagcattgttatttatctagagagtttttattaagaatttatcaaaaaaatgttttaatcaattaaatttgttatttagaaaaaatcaaagaagataatg 48852710  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcatttc 329  Q
    |||| |||||||| |||  ||||| |||||||| ||| ||||||        ||| ||||||||||||| ||||| ||||||||||||    
T  48852711 atgtataattaagaaaaaatgttaacaaatacattgttttaaaa-------attttttgataaattttgtcactggatctatcatttc 48852791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 9113514 - 9113450
Alignment:
Q  229 aagggaggtaatgatgtgtaattaaggaaatgtgttatc-aaatacactgtcttaaaattttctt 292  Q
    ||||||||||||||| |||||||||||||| || ||| | ||||||||| |||||||||||||||    
T  9113514 aagggaggtaatgatctgtaattaaggaaaggttttagcaaaatacactctcttaaaattttctt 9113450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 49313575 - 49313687
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| |||||||||| | ||||||||||| || |||| ||||||||||  | ||||  |||||||||||||||| |  ||||||||| | || |||||    
T  49313575 gagcattgctatttatccatagagtttttatcaagaattgatcaagaaaatgtctcaattaattaaatttgttattagtcggaaatcaaagaagataatg 49313674  T
Q  242 atgtgtaattaag 254  Q
    | || ||||||||    
T  49313675 aagtttaattaag 49313687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 33077719 - 33077784
Alignment:
Q  206 aaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaat 271  Q
    ||||||| ||||||  | |||||||| |||||||||||||||||||||  |||||||||| |||||    
T  33077719 aaatttgatatttgccgaaaatcaagagaggtaatgatgtgtaattaaataaatgtgttagcaaat 33077784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 264
Target Start/End: Original strand, 47996658 - 47996767
Alignment:
Q  155 tatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaag 254  Q
    ||||||||||||||||||   ||||| ||| | ||||  |||||  ||||||||||| ||||| | ||||||| |||||||||||| |  ||||||||||    
T  47996658 tatctagagagtttttatccgaaattgatccaaaaaatgtttcagtcaattaaatttcttattggctggaaattaagggaggtaatcaaatgtaattaag 47996757  T
Q  255 gaaatgtgtt 264  Q
     ||| |||||    
T  47996758 aaaaggtgtt 47996767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 4684518 - 4684586
Alignment:
Q  224 aaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||||||| |||| ||||| |||||||||||||||| |||||| ||||||   ||| | |||||||||||    
T  4684518 aaatcaaaggagataatggtgtgtaattaaggaaaggtgttagcaaatatgttgtttgaaaattttctt 4684586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 142 - 292
Target Start/End: Complemental strand, 3040400 - 3040250
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| | |||||| ||||||||||||||| || |||||||||||||||  | |||| |||||||||||||||| ||||| ||||||||||||||||||    
T  3040400 gagcattgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaatg 3040301  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
     |||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  3040300 gtgtgtaattaaggaaaggtgttagcaaatacactgtcttaaaattttctt 3040250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 142 - 328
Target Start/End: Complemental strand, 30735461 - 30735282
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| |||||||||||||| |||||||||||| ||| |||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||    
T  30735461 gagcattgctatttatctagatagtttttattaagaatatatcaagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaagggaggtaatg 30735362  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcattt 328  Q
     || ||||||||| ||| |||||| |||||||||||| || |||       |||||||||||||||||| ||||||| |||||||||    
T  30735361 ctgggtaattaagaaaaagtgttagcaaatacactgttttgaaa-------ttttcttgataaattttgtcactgtacctatcattt 30735282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 142 - 292
Target Start/End: Original strand, 40519147 - 40519296
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| |||||||||||||||||||||||| || ||||||| ||||| |  | |||||||||||||||||||||||| |||||||| ||||||||||||    
T  40519147 gagcattgctatttatctagagagtttttatcaagaatttattaagaataagtctcaaccaattaaatttgttatttgatggaaatc-agggaggtaatg 40519245  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||||||||||||| |||  | ||  ||||||||||||||||||||||||||    
T  40519246 atgtgtaattaagaaaaaatattggcaaatacactgtcttaaaattttctt 40519296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 142 - 291
Target Start/End: Original strand, 25493787 - 25493936
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| |||||||||||||||||||||||| || |||| ||||||||||  | ||| ||||||||||||||| ||||   |||||||| ||||||||||    
T  25493787 gagcattgctatttatctagagagtttttatcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaatg 25493886  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttct 291  Q
     ||||||||||||||||||| ||| |||||| |||||||| |||||||||    
T  25493887 gtgtgtaattaaggaaatgtattaacaaatatactgtcttgaaattttct 25493936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 142 - 292
Target Start/End: Original strand, 30071739 - 30071889
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| |||||||||||| |||||||||||  | |||||| ||||||||| | |||||||||||||||| ||||||| ||||||||| || ||||| ||    
T  30071739 gagcattgctatttatctaaagagtttttatctagaatttaacaagaaaaggtctcaaccaattaaatttattatttgttggaaatcatggaaggtagtg 30071838  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
     ||||||||| |||||| | |||| |||||||| |||||||||||||||||    
T  30071839 gtgtgtaattgaggaaaggagttagcaaatacattgtcttaaaattttctt 30071889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 150 - 289
Target Start/End: Complemental strand, 30701000 - 30700863
Alignment:
Q  150 ctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaa 249  Q
    ||||||||||||||  ||||||| |||||| ||| |||||||  | |||| |||||||||||||||||||  | |||| ||||||||||||| |||||||    
T  30701000 ctatttatctagag--tttttatcaaaaatatattaagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatgttgtgtaa 30700903  T
Q  250 ttaaggaaatgtgttatcaaatacactgtcttaaaatttt 289  Q
    ||||| ||| |||||| |||||||||||||||||||||||    
T  30700902 ttaagaaaaggtgttagcaaatacactgtcttaaaatttt 30700863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 143 - 334
Target Start/End: Original strand, 24402009 - 24402198
Alignment:
Q  143 agcatcgctatttatctagagagtttttatta---aaaatttatcaagaaaagttttcaaccaattaaatttgttatttggt-ggaaat-caagggaggt 237  Q
    ||||| ||||||||| |||||||||||| |||   | |||||||||||||||| | |||||||| ||||||||||||||||| |||||| ||| ||| |     
T  24402009 agcattgctatttatttagagagttttttttatcaagaatttatcaagaaaagatctcaaccaaataaatttgttatttggtcggaaatacaaagga-gc 24402107  T
Q  238 aatgatgtgtaattaaggaaatgtgttatcaaatacactgt-cttaaaattttcttttttcttgataaattttgccactgtatctatcatttcgctta 334  Q
    |||||||||||||||||||||  ||||| | |||||| ||| ||| |||       |||||||||||||||||| || ||||||||||||||| ||||    
T  24402108 aatgatgtgtaattaaggaaaactgttaac-aatacaatgtactttaaa------attttcttgataaattttgtcattgtatctatcatttccctta 24402198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 329
Target Start/End: Complemental strand, 34280192 - 34280066
Alignment:
Q  196 tcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttt 295  Q
    |||| |||||||||||||||||||| |||||| |||| || ||||| | ||||||||||||||  ||||| ||||||||||| |||||||       | |    
T  34280192 tcaatcaattaaatttgttatttggcggaaattaaggaagataatggtatgtaattaaggaaagatgttaacaaatacactgacttaaaa-------tat 34280100  T
Q  296 tcttgataaattttgccactgtatctatcatttc 329  Q
    | |||||||||| || ||||||||||||||||||    
T  34280099 tattgataaattctgtcactgtatctatcatttc 34280066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 7547293 - 7547366
Alignment:
Q  201 caattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacac 275  Q
    |||| ||||||||||||||  ||||||||||| || ||||||| ||||||||||||||||||||| |||||||||    
T  7547293 caatcaaatttgttatttgacggaaatcaagg-agataatgatttgtaattaaggaaatgtgttagcaaatacac 7547366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 21259195 - 21259301
Alignment:
Q  151 tatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaat 250  Q
    |||||||||||||||||||||| || |||| || |||||||| ||| | | ||||||||||  |  | |  ||||||||||||||||||||  |||||||    
T  21259195 tatttatctagagagtttttatcaagaattgataaagaaaaggtttaagctaattaaatttcatgctggacggaaatcaagggaggtaatg-ggtgtaat 21259293  T
Q  251 taaggaaa 258  Q
    ||||||||    
T  21259294 taaggaaa 21259301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 20359962 - 20360031
Alignment:
Q  223 gaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    |||||||| |||| ||||| ||||||||||| |||| |||||| |||||| || ||||| ||| ||||||    
T  20359962 gaaatcaaaggagataatggtgtgtaattaaagaaaggtgttagcaaatataccgtcttgaaactttctt 20360031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 142 - 293
Target Start/End: Complemental strand, 21882909 - 21882758
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| ||||||||||||||||| |||||| || |||| || |||||||| | ||| ||||||||||||||||||||  ||||||||||||||||||||    
T  21882909 gagcattgctatttatctagagagattttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaatg 21882810  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttt 293  Q
     |||||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  21882809 gtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttcttt 21882758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 46413849 - 46413736
Alignment:
Q  179 tttatcaagaaaagttttcaaccaattaaatttgttatttggtgg---aaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacac 275  Q
    |||||||||||||  | ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  46413849 tttatcaagaaaatgtctcaaccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacac 46413750  T
Q  276 tgtcttaaaatttt 289  Q
    |||||| |||||||    
T  46413749 tgtcttgaaatttt 46413736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 150 - 292
Target Start/End: Complemental strand, 23611881 - 23611740
Alignment:
Q  150 ctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaa 249  Q
    |||||||||||||||||||||||||| |||||||||||||||  | ||||| ||||||||||||||||||  |||||||||| |||||||||   |||||    
T  23611881 ctatttatctagagagtttttattaagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaagagaggtaatg-gatgtaa 23611783  T
Q  250 ttaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||||| ||| |||||| |||||||||||| || ||||||||||    
T  23611782 ttaagtaaaggtgttaacaaatacactgttttgaaattttctt 23611740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 46297589 - 46297711
Alignment:
Q  150 ctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaa 249  Q
    ||||||||||||||||||||||| || |||||||||||||||  | ||| ||| || |||||||||||||  | |||||||||||| ||||| |||||||    
T  46297589 ctatttatctagagagtttttatcaagaatttatcaagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaatggtgtgtaa 46297688  T
Q  250 ttaaggaaatgtgttatcaaata 272  Q
    |||||||||||||||| ||||||    
T  46297689 ttaaggaaatgtgttagcaaata 46297711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 151 - 292
Target Start/End: Original strand, 22631457 - 22631598
Alignment:
Q  151 tatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaat 250  Q
    |||||||||| |||  ||||||||| |||| ||||||||||| | ||| ||||||||||||||||||||  ||||||||| |||| ||||  ||||||||    
T  22631457 tatttatctaaagatattttattaagaattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgtgtaat 22631556  T
Q  251 taaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    |||||||| |||||| | ||||||| ||||| ||||||||||    
T  22631557 taaggaaaggtgttagctaatacaccgtcttgaaattttctt 22631598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 292
Target Start/End: Original strand, 1985032 - 1985124
Alignment:
Q  200 ccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||||||||||||||||||||  ||||||||||| |||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  1985032 ccaattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaattaaggaaatgtgttagcaaatacactatcttaaaattttctt 1985124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 149 - 291
Target Start/End: Complemental strand, 23730636 - 23730497
Alignment:
Q  149 gctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgta 248  Q
    |||||||||| |||||| |||||| || |||| ||||||||||  ||||| | ||||||||| ||||||||  |||||||||| |||||||||  |||||    
T  23730636 gctatttatcgagagagattttatcaagaattgatcaagaaaacgtttcagcaaattaaattcgttatttgtcggaaatcaagagaggtaatg--gtgta 23730539  T
Q  249 attaaggaaatgtgttatcaaatacactgtcttaaaattttct 291  Q
    |||||||||| |||||| ||||||||||||| |||||||||||    
T  23730538 attaaggaaaggtgttaacaaatacactgtc-taaaattttct 23730497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 291
Target Start/End: Original strand, 8123659 - 8123808
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| ||||||||||||||||| |||||| |  |||| ||||||||||  | |||  ||||||||||||||||||| ||||||| || |||| ||||     
T  8123659 gagcattgctatttatctagagagattttatcatgaattgatcaagaaaatgtctcagtcaattaaatttgttatttgttggaaattaatggagataata 8123758  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttct 291  Q
    |||| ||||||| |||| |||||| |||||| || ||| |||||||||||    
T  8123759 atgtataattaaagaaaggtgttagcaaatataccgtcctaaaattttct 8123808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 292
Target Start/End: Original strand, 20125566 - 20125708
Alignment:
Q  150 ctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaa 249  Q
    |||||||||||||||| |||||| || |||| ||||||||||  | ||| |||||||||||||||| |||   ||||| || | || ||||| |||||||    
T  20125566 ctatttatctagagaggttttatcaagaattgatcaagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagataatggtgtgtaa 20125665  T
Q  250 ttaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    |||| |||| || ||| ||||||||||||||| ||||||||||    
T  20125666 ttaaagaaaggtattagcaaatacactgtcttcaaattttctt 20125708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 24250594 - 24250482
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| ||||| |||||| |||| |||||| || |||| ||||||||||| | | | |||||| |||||||||||||  ||||||||||||||||||||    
T  24250594 gagcattgctatctatctaaagagattttatcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaagggaggtaatg 24250495  T
Q  242 atgtgtaattaag 254  Q
     | ||||||||||    
T  24250494 gtttgtaattaag 24250482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 289
Target Start/End: Original strand, 19511387 - 19511525
Alignment:
Q  151 tatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaat 250  Q
    ||||||||| ||||| |||||| || |||| || |||||||  ||| | |||||||||||| ||||||  |||||||||| |||| ||||  || |||||    
T  19511387 tatttatctcgagagattttatcaagaattgattaagaaaaagttttagccaattaaatttattattttttggaaatcaatggagataatagtgagtaat 19511486  T
Q  251 taaggaaatgtgttatcaaatacactgtcttaaaatttt 289  Q
    |||||||| ||||||  |||||||||||||  |||||||    
T  19511487 taaggaaaggtgttaataaatacactgtctcgaaatttt 19511525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 281
Target Start/End: Original strand, 44600996 - 44601107
Alignment:
Q  162 agagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgt 261  Q
    ||||||||||| || |||||   |||||||  |||||| ||||||||||||||||||||         |||||| |||||||||||||||||| ||||||    
T  44600996 agagtttttatcaagaatttgataagaaaatgtttcaatcaattaaatttgttatttggc--------agggagataatgatgtgtaattaagaaaatgt 44601087  T
Q  262 gttatcaaatacactgtctt 281  Q
    |||| |||||||||||||||    
T  44601088 gttagcaaatacactgtctt 44601107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 15127678 - 15127637
Alignment:
Q  178 atttatcaagaaaagttttcaaccaattaaatttgttatttg 219  Q
    ||||||||||||||| ||||| | ||||||||||||||||||    
T  15127678 atttatcaagaaaaggtttcagcaaattaaatttgttatttg 15127637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 149 - 329
Target Start/End: Original strand, 1632784 - 1632956
Alignment:
Q  149 gctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgta 248  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||  | ||||| ||||||||||||||||| | ||||||||| |||||||||| ||||||    
T  1632784 gctatttatctagagaatttttatcaaaaatt-atcaagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggtaatggtgtgta 1632882  T
Q  249 attaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcatttc 329  Q
    ||||| |||| |||||| |||||||||||||||  ||       |||| ||||||||||||| ||||||||||||||||||    
T  1632883 attaaagaaacgtgttaacaaatacactgtcttggaa-------tttttttgataaattttgtcactgtatctatcatttc 1632956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 179 - 292
Target Start/End: Original strand, 26442954 - 26443067
Alignment:
Q  179 tttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgt 278  Q
    |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||  ||| |||||| ||||||||||||    
T  26442954 tttatcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaacaaaaggtgttaccaaatacactgt 26443053  T
Q  279 cttaaaattttctt 292  Q
    ||| ||||||||||    
T  26443054 cttgaaattttctt 26443067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 328
Target Start/End: Complemental strand, 18272066 - 18271924
Alignment:
Q  179 tttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgt 278  Q
    |||||||||||||  | ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||| |||||| ||||||| || |    
T  18272066 tttatcaagaaaatatctcaaccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgttagcaaatactctat 18271967  T
Q  279 cttaaaattttcttttttcttgataaattttgccactgtatctatcattt 328  Q
    ||||||||||       ||||||||||||||| |||| ||||||||||||    
T  18271966 cttaaaattt-------tcttgataaattttgtcactatatctatcattt 18271924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 140 - 291
Target Start/End: Original strand, 34905812 - 34905963
Alignment:
Q  140 tcgagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaa 239  Q
    |||||||| |||||||||||||| || |||||| || |||| || |||||||  | ||| ||| ||||||||||||||||    ||||||| ||||||||    
T  34905812 tcgagcattgctatttatctagatagattttatcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaa 34905911  T
Q  240 tgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttct 291  Q
    |||||| |||||||||||| |||||| |||||||||||||||||||||||||    
T  34905912 tgatgtataattaaggaaaggtgttagcaaatacactgtcttaaaattttct 34905963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 142 - 292
Target Start/End: Complemental strand, 45853074 - 45852924
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| | |||||||||| |||| |||||| || |||| ||||||||||  | |||||||||||||||| ||||||| | | ||||||||||| |||||    
T  45853074 gagcattgttatttatctatagagattttatcaagaattaatcaagaaaaagtctcaaccaattaaatttattatttgcttgcaatcaagggagataatg 45852975  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    || |||||||||| ||| |||||| ||||||||| ||||||||||||||||    
T  45852974 atatgtaattaagaaaaggtgttagcaaatacacggtcttaaaattttctt 45852924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 292
Target Start/End: Original strand, 2671895 - 2672021
Alignment:
Q  166 tttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgtta 265  Q
    ||||||| || |||| ||||||||||| | ||| |||||||||||||||||| | || ||||||  |||| ||||||||||||||||||||||  |||||    
T  2671895 tttttatcaagaattgatcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaagatgtta 2671994  T
Q  266 tcaaatacactgtcttaaaattttctt 292  Q
     ||||||||||||||||||||||||||    
T  2671995 acaaatacactgtcttaaaattttctt 2672021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 292
Target Start/End: Complemental strand, 40840780 - 40840639
Alignment:
Q  150 ctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaa 249  Q
    |||||||| |||||| ||||||| ||| ||||||||| ||||  ||||||| |||||||||| |||||||| ||||||||| |||||||||||||| |||    
T  40840780 ctatttatttagagaatttttatcaaatatttatcaaaaaaatgtttcaactaattaaatttattatttggcggaaatcaaaggaggtaatgatgtataa 40840681  T
Q  250 ttaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    | || |||| | |||| |  ||||||| |||| ||||||||||    
T  40840680 tcaaagaaa-gagttaacctatacactctcttgaaattttctt 40840639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 1714078 - 1713970
Alignment:
Q  182 atcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtctt 281  Q
    ||||||||||  |||||| |||||||||||||||||||| |||||| ||||||| ||||  ||| |||||||| |||| |||||  ||||||||||||||    
T  1714078 atcaagaaaatatttcaatcaattaaatttgttatttggcggaaattaagggagataattgtgtataattaagaaaatatgttaataaatacactgtctt 1713979  T
Q  282 aaaattttc 290  Q
     ||||||||    
T  1713978 gaaattttc 1713970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 10593591 - 10593451
Alignment:
Q  151 tatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaat 250  Q
    ||||||| ||||||| |||||| || |||||||| ||||||  | ||||||||||||||||||||||| | || | |||||  |  ||||| ||| ||||    
T  10593591 tatttatttagagagattttatcaagaatttatccagaaaatgtctcaaccaattaaatttgttatttagcgg-attcaagaaaactaatggtgtataat 10593493  T
Q  251 taaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    || | ||| |||||| |||||||||| |||||||||||||||    
T  10593492 taggaaaaggtgttaacaaatacactatcttaaaattttctt 10593451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 48897820 - 48897675
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| ||||||||||||||||| |||||| || |||| ||||| ||||  ||||| | | ||||||||||||||||  | ||||||| |||  |||||    
T  48897820 gagcattgctatttatctagagagattttatcaagaattaatcaaaaaaatgtttcagcaagttaaatttgttatttgtcgaaaatcaatggaaataatg 48897721  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaatt 287  Q
     |||||||||||| |||  ||||| |||||| |||| ||| |||||    
T  48897720 gtgtgtaattaagaaaagatgttagcaaatagactgccttgaaatt 48897675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 31192081 - 31192177
Alignment:
Q  196 tcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    |||| ||||||||||||||||||  || |||| ||| ||| ||||  ||||||||||||||||  | ||| ||||||| ||||||||||||||||||    
T  31192081 tcaatcaattaaatttgttatttattgaaaattaagagagataatagtgtgtaattaaggaaagatattagcaaataccctgtcttaaaattttctt 31192177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 3169379 - 3169272
Alignment:
Q  149 gctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgta 248  Q
    |||||||||||||||  ||||||| || |||| ||||||||||| ||| | ||||||||||||  |    |  |||||||||||| |||||||| |||||    
T  3169379 gctatttatctagag--tttttatcaagaattgatcaagaaaaggtttaagccaattaaatttcatgaaggccggaaatcaagggcggtaatgaggtgta 3169282  T
Q  249 attaaggaaa 258  Q
    ||||||||||    
T  3169281 attaaggaaa 3169272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 5718528 - 5718437
Alignment:
Q  201 caattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||||||||||| |||||||  ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5718528 caattaaatttattatttgtcggaaatcaaggaaggtaatggtgtgtaattaaggaaatgtgttagcaaatacactgtcttaaaattttctt 5718437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 142 - 292
Target Start/End: Original strand, 29414352 - 29414500
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| |||||||||||||||  ||||||| ||||||| ||||||||||  | ||| ||||||||||||||||||||  | ||||||||| ||||||||    
T  29414352 gagcattgctatttatctagag--tttttatcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatg 29414449  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
     ||| |||||||||||| |||||| ||||| |||||| || ||||||||||    
T  29414450 gtgtttaattaaggaaaggtgttaacaaatgcactgttttgaaattttctt 29414500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 38585219 - 38585078
Alignment:
Q  151 tatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaat 250  Q
    ||||||| |||||||||||||| || |||||||||||||||  ||||||  |||||||||||| |||||| ||||||||| |||||||||  ||||||||    
T  38585219 tatttatttagagagtttttatcaagaatttatcaagaaaatgtttcaattaattaaatttgtcatttggcggaaatcaaaggaggtaattgtgtgtaat 38585120  T
Q  251 taaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||| |||| |||||| |||||||| ||  || ||||||||||    
T  38585119 taaagaaaagtgttagcaaatacattgctttgaaattttctt 38585078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 331
Target Start/End: Original strand, 25124400 - 25124520
Alignment:
Q  204 ttaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgata 303  Q
    ||||| ||||||||||| |||||||||| ||| |||||||||||||||||| ||| || ||| ||||||||||||||| |||       |||||||||||    
T  25124400 ttaaagttgttatttggcggaaatcaagagagataatgatgtgtaattaagaaaaggtattaacaaatacactgtcttgaaa-------ttttcttgata 25124492  T
Q  304 aattttgccactgtatctatcatttcgc 331  Q
    ||||||| ||||||||||||||||||||    
T  25124493 aattttgtcactgtatctatcatttcgc 25124520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 5686376 - 5686280
Alignment:
Q  196 tcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    |||| |||||||||||||||||||  ||||||||||||||||||| || ||||||||| ||||||||||| ||||||| || |||| ||||||||||    
T  5686376 tcaatcaattaaatttgttatttgccggaaatcaagggaggtaataatatgtaattaatgaaatgtgttagcaaatacgctatcttgaaattttctt 5686280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 179 - 288
Target Start/End: Original strand, 26415557 - 26415666
Alignment:
Q  179 tttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgt 278  Q
    |||||||||||||| | |||||||||||||||| |||||||  |||||| ||  ||| |||||||||||||||||||||| || ||| |||||| ||| |    
T  26415557 tttatcaagaaaaggtctcaaccaattaaatttattatttgacggaaattaaaagagataatgatgtgtaattaaggaaaggtattagcaaatatactat 26415656  T
Q  279 cttaaaattt 288  Q
    ||||||||||    
T  26415657 cttaaaattt 26415666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 138 - 292
Target Start/End: Original strand, 33543314 - 33543465
Alignment:
Q  138 aatcgagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggt 237  Q
    |||||||||| | ||||||| || ||| ||||||| |||||||||| || ||| || | |||||||| |||||||||||||||  ||||||||||||| |    
T  33543314 aatcgagcattgttatttat-tatagaatttttatcaaaaatttataaaaaaatgtct-caaccaataaaatttgttatttggctgaaatcaagggagat 33543411  T
Q  238 aatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    |||| |||||||||||  ||| |||||| |||||| |||||||| | ||||||||    
T  33543412 aatg-tgtgtaattaaaaaaaggtgttaacaaatatactgtcttgatattttctt 33543465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 29543752 - 29543676
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttattt 218  Q
    |||||| | |||||||| ||||||||||||| ||||||||||||||||||  | |||||||||||||||||||||||    
T  29543752 gagcattgttatttatcaagagagtttttatcaaaaatttatcaagaaaatatctcaaccaattaaatttgttattt 29543676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 24068257 - 24068141
Alignment:
Q  141 cgagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaat 240  Q
    ||||||| ||||||||||||||||| |||||| || |||| ||| ||||||  | ||| ||||||||||||||||||||    ||||||| |||||| ||    
T  24068257 cgagcattgctatttatctagagagattttatcaagaattgatcgagaaaaagtctcagccaattaaatttgttatttgcca-aaatcaaaggaggtgat 24068159  T
Q  241 gatgtgtaattaaggaaa 258  Q
    | ||||||||||||||||    
T  24068158 ggtgtgtaattaaggaaa 24068141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 278
Target Start/End: Complemental strand, 36947367 - 36947229
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagtttt--caaccaattaaatttgttatttggtggaaatcaagggaggtaa 239  Q
    |||||| | ||||||||||||||| |||||| || |||| || || ||||  | |  ||| ||||||||||||||||| |    |||| |||||||||||    
T  36947367 gagcattgttatttatctagagagattttatcaagaattgataaaaaaaaaatgtatcaatcaattaaatttgttattggccaaaaatgaagggaggtaa 36947268  T
Q  240 tgatgtgtaattaaggaaatgtgttatcaaatacactgt 278  Q
    |||||| ||||||| |||||||||||  |||||||||||    
T  36947267 tgatgtataattaaagaaatgtgttaataaatacactgt 36947229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 257
Target Start/End: Original strand, 35393710 - 35393823
Alignment:
Q  144 gcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgat 243  Q
    |||| |||||||||||||||||||||||| || |||| |||||||||   ||| | |||||| |||||  ||||    | ||||||||||||||||||      
T  35393710 gcattgctatttatctagagagtttttatcaagaattgatcaagaaagagtttaagccaattgaatttcatattgaccgaaaatcaagggaggtaatggg 35393809  T
Q  244 gtgtaattaaggaa 257  Q
    ||||||||||||||    
T  35393810 gtgtaattaaggaa 35393823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 292
Target Start/End: Complemental strand, 43063955 - 43063842
Alignment:
Q  179 tttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgt 278  Q
    |||||||| ||||| | |||  ||||||||||| ||||||| || |||||||   |||||||||||| |||||||  |||  | ||| |||||||| | |    
T  43063955 tttatcaaaaaaaggtctcagtcaattaaatttattatttgttgaaaatcaaataaggtaatgatgtataattaaaaaaagatattaacaaatacattat 43063856  T
Q  279 cttaaaattttctt 292  Q
    || |||||||||||    
T  43063855 ctcaaaattttctt 43063842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 70056 - 69949
Alignment:
Q  151 tatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaat 250  Q
    ||||||||||||||||||||||  |||||| ||||||||||| ||||| |||||||||||||||||| |  |||||||||||||| |||||  |||||||    
T  70056 tatttatctagagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaat 69957  T
Q  251 taaggaaa 258  Q
    ||||||||    
T  69956 taaggaaa 69949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 142 - 278
Target Start/End: Original strand, 18602 - 18738
Alignment:
Q  142 gagcatcgctatttatctagagagtttttattaaaaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaagggaggtaatg 241  Q
    |||||| |||||||||||| |||| ||||||||| |||| ||||||||||  | | |  |||||||||||||||||||  | |||| ||||||| |||||    
T  18602 gagcattgctatttatctaaagagattttattaagaattgatcaagaaaaagtcttagtcaattaaatttgttatttgtcgaaaattaagggagataatg 18701  T
Q  242 atgtgtaattaaggaaatgtgttatcaaatacactgt 278  Q
     || |||||||||||||||||||| ||||||||||||    
T  18702 gtgagtaattaaggaaatgtgttagcaaatacactgt 18738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 329
Target Start/End: Complemental strand, 27180 - 27069
Alignment:
Q  211 tgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttg 310  Q
    |||||||||| |||||||||||||| ||||   ||||||||||||||| |||||| ||||||||||||||| |||       ||||||||||||||||||    
T  27180 tgttatttggcggaaatcaagggagataatagagtgtaattaaggaaaggtgttaacaaatacactgtcttgaaa-------ttttcttgataaattttg 27088  T
Q  311 ccactgtatctatcatttc 329  Q
     ||||||||||||||||||    
T  27087 tcactgtatctatcatttc 27069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 19220 - 19308
Alignment:
Q  204 ttaaatttgttatttggtggaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttatcaaatacactgtcttaaaattttctt 292  Q
    ||||||||||||||||  ||||||||| |||||||||  |||||  ||||  ||| || ||| ||||||||| | ||||||||||||||    
T  19220 ttaaatttgttatttgacggaaatcaaaggaggtaatagtgtgtcgttaaaaaaaggtattaacaaatacacagacttaaaattttctt 19308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University