View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_high_18 (Length: 416)
Name: NF6567_high_18
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 21 - 405
Target Start/End: Original strand, 43206472 - 43206860
Alignment:
| Q |
21 |
atgtttcacttattaattgatttttaatttcgcgtagaggaacgttgaagaagtttaaatgaggaagtttcgagtttgatccttgaactcagacgtagat |
120 |
Q |
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| T |
43206472 |
atgtttcacttattaattgatttttagtttcgcgtagaggaacgttgaagaaatttaaatgaggaagtttcgagtttgatccctgaactcagacgtagat |
43206571 |
T |
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| Q |
121 |
tattcttcttgtgactaatattacaaactcaaataggcaaccgaataaaatagaagaaagatgaaaacaagaaaccaagctttaagagatgcaatataca |
220 |
Q |
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| T |
43206572 |
tattcttcttgtgactaatattacaaactcaaataggcaaccgaataaaatagaagaaagatgaaaacaagaaaccaagctttaagagatgcaatataca |
43206671 |
T |
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| Q |
221 |
gtttattacaatatataggagtttctctttgatttctattgtggactatgtaacttgcttagcaagctacttgagttcaagtgctattgtactagttagt |
320 |
Q |
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| T |
43206672 |
gtttattacaatatataggagtttctctttgatttctattatagactatgtaacttgcttagcaagctacttgagttcaagtgctattctactagttagt |
43206771 |
T |
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| Q |
321 |
acacaatagttagcataggcttcctattttg----tatacatgttgtactgaacctttccaattaatgaaacaatgagtattcattcat |
405 |
Q |
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| T |
43206772 |
acacaatagttagcataggcttcctattttgtgtatatacatgttgtactgaacctttccaattaatgaaacaatgagtattcattcat |
43206860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 17206091 - 17206193
Alignment:
| Q |
126 |
ttcttgtgactaata-ttacaaactcaaataggcaaccgaataaaatagaagaaagatgaaaacaagaaaccaagctttaagagatgcaatatacagttt |
224 |
Q |
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| T |
17206091 |
ttcttgtgactaagaattacacacacaaataggcaactgaataaaatagataaaagat-aaaacaaaaaaccaagctttaagaaatgtagtatacaattt |
17206189 |
T |
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| Q |
225 |
atta |
228 |
Q |
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|||| |
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| T |
17206190 |
atta |
17206193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 18832153 - 18832229
Alignment:
| Q |
224 |
tattacaatatataggagtttctctttgatttctattgtggactatgtaacttgcttagcaagctacttgagttcaa |
300 |
Q |
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| T |
18832153 |
tattacaataaatcggagtttctctttgttttttagtttagactatgtaacttgcatagcaagccactagagttcaa |
18832229 |
T |
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