View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_high_2 (Length: 648)
Name: NF6567_high_2
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_high_2 |
 | |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 548; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Original strand, 16589221 - 16589863
Alignment:
| Q |
1 |
aatacagaagtttgtcaaatacatttatctacattgaaatttgaatgagatgcaacaag-------------ttatgacatgtaccttaactggtccaag |
87 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16589221 |
aatacagaagtttgtcaaatacatttatctacattgaaatttgaatgagatgcaacaagttatgcatgcaagttatgacatgtaccttaactggtccaag |
16589320 |
T |
|
| Q |
88 |
cacgccatttaaacctccgagaagaaatctggtgacaatagccatccaaaaacccgtactaaggccgaataatgtgttgaaaatgacactgaaatcaagt |
187 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16589321 |
cacgccatttaaacctccgagaagaaatctggtggcaatagccatccaaaaacccgtactaaggccgaataatgtgttgaaaatgacactgaaatcaagt |
16589420 |
T |
|
| Q |
188 |
aaaacatgaacaattgtgggagaaatcacacaacataactaaaagaaagaatctcattcattgttattagatactactaacactgcgataatccccatta |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16589421 |
aaaacatgaacaattgtgggagaaatcacacaacataacttaaagaaagaatcgcattcattgttattagatactacttacactgcgataatccccatta |
16589520 |
T |
|
| Q |
288 |
ttaatacaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgtatgaagatcctaaaaacattttcaa |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16589521 |
ttaatacaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgtatgaagatcctaaaaacattttcaa |
16589620 |
T |
|
| Q |
388 |
tcataatcaatgaagaacttataacaatgataaaagacttaattgaat-ggaaatactaaaaataatcttaccaatataaccagcatagtaactaatatc |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16589621 |
tcataatcaatgaagaacttataacaatgataaaagacttaaatgaatgggaaatactaaaaataatcttaccaatataaccagcatagtaactaatatc |
16589720 |
T |
|
| Q |
487 |
agcttcttcttttgcaacattgaagtcccttacctaaaaataaatgttgcattattgagcattgtattattgaatcaatcagtttagagttgaatactaa |
586 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16589721 |
agcttcttcttttgcaacattgaagtcccttacctaaaaataaatgttgcattattgagcattgtattattgaatcaaccagtttagagttgaatactaa |
16589820 |
T |
|
| Q |
587 |
tcaaatatttcagtttttgagtatttcactagatatgacaaaac |
630 |
Q |
| |
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|| ||||||||||||||| |||||||||| | |||||||||||| |
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| T |
16589821 |
tcgaatatttcagtttttcagtatttcac-aaatatgacaaaac |
16589863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 69 - 545
Target Start/End: Original strand, 16529295 - 16529773
Alignment:
| Q |
69 |
gtaccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtgacaatagccatccaaaaacccgtactaaggccgaataatgtgttgaa |
168 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
16529295 |
gtaccttaactggcccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaataacccgtactaaggccaaataatgtgttgaa |
16529394 |
T |
|
| Q |
169 |
aatgacactgaaatcaagtaaaacatgaacaattgtgggagaaatcacacaacataactaaaagaaagaatctcattcatt-----gttattagatacta |
263 |
Q |
| |
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||||||||||||||||||| ||||| || ||| || | ||||||||| ||||| | | ||||||| | | |||| | || || ||||||| |
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| T |
16529395 |
aatgacactgaaatcaagt-taacatcaatgattatgagcgaaatcacaaaacatgatttaaagaaaacacccatttcaatattcatttgttggatacta |
16529493 |
T |
|
| Q |
264 |
ctaacactgcgataatccccattattaatacaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgta |
363 |
Q |
| |
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|| ||||||| || || ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| | |
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| T |
16529494 |
cttacactgcaatgattcccatgattataacaggttttcgaccatagcgatctgaaaccattccccatagtacagacgtcaaacatcttccaagcatgaa |
16529593 |
T |
|
| Q |
364 |
tgaagatcctaaaaacattttcaatcataatcaatgaagaacttataacaatgataaaagacttaattgaatggaaatactaaaa-----ataatcttac |
458 |
Q |
| |
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||||||||| | | |||||||| ||| |||||||||||| |||| ||||||||| | ||| |||||||||||||| | |||||||| |
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| T |
16529594 |
cgaagatcct-acagcattttcagtca-cttcaatgaagaacatatatcaatgataatattctt-----cttggaaatactaaaaaaaagaaaatcttac |
16529686 |
T |
|
| Q |
459 |
caatataaccagcatagtaactaatatcagcttcttcttttgcaacattgaagtcccttacctaaaaataaatgttgcattattgag |
545 |
Q |
| |
|
||| |||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||| || |||| ||| |||||||||| |
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|
| T |
16529687 |
caacataaccagcataataacttatatcagcttcttcttttgcaacgttgaaatcccttacctgaacataagagtttcattattgag |
16529773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 293 - 555
Target Start/End: Original strand, 16521038 - 16521300
Alignment:
| Q |
293 |
acaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgtatgaagatcctaaaaacattttcaatcata |
392 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||| || ||| ||||||||| |||| |||||| | |||||||||||| || |
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|
| T |
16521038 |
acaggttttcgaccatagcgatcagaaaccattccccataatacagatgtcaatgttctaccaagcatgaatgatgatcct-acaacattttcaattatc |
16521136 |
T |
|
| Q |
393 |
atcaatgaagaacttataacaatgataaaagacttaattgaatggaaatactaaaaataatcttaccaatataaccagcatagtaactaatatcagcttc |
492 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||| || ||||| || |||||||||||||||| | ||| ||||||||||| ||||||||||| || |
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|
| T |
16521137 |
accaatgaacaacttataacaatgataaaagacttcgaagagtggaagtattaaaaataatcttacctacatagccagcatagtagctaatatcagcctc |
16521236 |
T |
|
| Q |
493 |
ttcttttgcaacattgaagtcccttacct-aaaaataaatgttgcattattgagcattgtatta |
555 |
Q |
| |
|
|||||||| || || |||||||||| ||||||||| ||||||| || ||| ||| ||||| |
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|
| T |
16521237 |
ggattttgcaattttaaaatcccttacctgaaaaataaacgttgcatcatcgaggattatatta |
16521300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 16520780 - 16520896
Alignment:
| Q |
69 |
gtaccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtgacaatagccatccaaaaacccgtactaaggccgaataatgtgttgaa |
168 |
Q |
| |
|
||||||| |||||||||| | ||||||||| ||| | ||||||||| |||| || |||||||||||||| |||||||||||| || | |||||||| |
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|
| T |
16520780 |
gtacctttactggtccaattgcaccatttaaagttcccaaaagaaatcttgtgataacagccatccaaaaactcgtactaaggccaaaaagtgtgttgag |
16520879 |
T |
|
| Q |
169 |
aatgacactgaaatcaa |
185 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
16520880 |
aacgacactgaaatcaa |
16520896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 189
Target Start/End: Original strand, 26370706 - 26370826
Alignment:
| Q |
69 |
gtaccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtgacaatagccatccaaaaacccgtactaaggccgaataatgtgttgaa |
168 |
Q |
| |
|
||||||| | ||||||||||| |||||||||| ||| |||| ||| | || || |||||||||||||| || |||||||| |||| ||||||||| |
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|
| T |
26370706 |
gtaccttcattggtccaagcaaaccatttaaacttccaagaaaaaaccgtgttgtaacagccatccaaaaacttgtgctaaggccaaatagtgtgttgaa |
26370805 |
T |
|
| Q |
169 |
aatgacactgaaatcaagtaa |
189 |
Q |
| |
|
||||| |||||||| |||||| |
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|
| T |
26370806 |
aatgatactgaaataaagtaa |
26370826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 180; Significance: 7e-97; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 69 - 558
Target Start/End: Original strand, 121 - 607
Alignment:
| Q |
69 |
gtaccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtgacaatagccatccaaaaacccgtactaaggccgaataatgtgttgaa |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
121 |
gtaccttaactggtccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaaaaacccgtactgaggccaaataatgtgttgaa |
220 |
T |
|
| Q |
169 |
aatgacactgaaatcaagtaaaacatgaacaattgtgggagaaatcacacaacataactaaaagaaaga---atctcattcat-tgttattagatactac |
264 |
Q |
| |
|
||||||||||||||||||| |||||| || |||| || |||| ||| |||||||||||| ||||||| | || ||| | | | || ||||||||||| |
|
|
| T |
221 |
aatgacactgaaatcaagt-aaacatcaataattatgagagacatcccacaacataacttaaagaaacatccatttcaatattcttttgttagatactac |
319 |
T |
|
| Q |
265 |
taacactgcgataatccccattattaatacaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgtat |
364 |
Q |
| |
|
| ||||||| || || ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| | |
|
|
| T |
320 |
ttacactgcaatgattcccatgattataacaggttttcgaccatagcgatctgaaaccattccccatagtacagacgtcaaacatcttccaagcatgaac |
419 |
T |
|
| Q |
365 |
gaagatcctaaaaacattttcaatcataatcaatgaagaacttataacaatgataaaagacttaattgaatggaaatactaaaaataa-----tcttacc |
459 |
Q |
| |
|
||||||||| | | |||||||| ||| |||||||||||| |||| ||||||||| | ||| ||||||||||||||| || ||||||| |
|
|
| T |
420 |
gaagatcct-acagcattttcagtca-cttcaatgaagaacatatatcaatgataatattctt-----cttggaaatactaaaaaaaagaaattcttacc |
512 |
T |
|
| Q |
460 |
aatataaccagcatagtaactaatatcagcttcttcttttgcaacattgaagtcccttacctaaaaataaatgttgcattattgagcattgtattattg |
558 |
Q |
| |
|
|| ||||||||| || ||||| ||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||| || |||||||||||| |
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|
| T |
513 |
aacataaccagcgtaataacttatatcagcttcttcttttgcaacgttgaaatcccttacctgaaaata----ttgcattattaaggattgtattattg |
607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 2606639 - 2606519
Alignment:
| Q |
69 |
gtaccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtgacaatagccatccaaaaacccgtactaaggccgaataatgtgttgaa |
168 |
Q |
| |
|
||||||| | ||||||||||| |||||||||| ||| |||| ||| | || || |||||||||||||| ||| |||||||| |||| ||||||||| |
|
|
| T |
2606639 |
gtaccttcattggtccaagcaaaccatttaaacatccaagaaaaaaccgcgttgtaacagccatccaaaaactcgtgctaaggccaaatagtgtgttgaa |
2606540 |
T |
|
| Q |
169 |
aatgacactgaaatcaagtaa |
189 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
2606539 |
gatgatactgaaatcaagtaa |
2606519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 374
Target Start/End: Complemental strand, 2620778 - 2620697
Alignment:
| Q |
293 |
acaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgtatgaagatccta |
374 |
Q |
| |
|
||||||||||||||||||||||| | | |||||||||||||| || ||| || ||| ||||||||||| | |||||||| |
|
|
| T |
2620778 |
acaggttttcgaccatagcgatcggctatcattccccataatatagatgtcgaagctctaccaagcatgtaggcagatccta |
2620697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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