View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6567_high_20 (Length: 402)
Name: NF6567_high_20
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 24401815 - 24401696
Alignment:
| Q |
12 |
atgaatcttaaacaagttattcaaaacttaattgaatttaatttcaattaaataatcaattatttgtaatagaaaattgtttccagtgttgtgtgttttg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24401815 |
atgaatcttaaacaagttattcaaaacttaattgaatttaatttcaattaaataatcaattatttgtaatagaaaattgtttccagtgttgtgtgttttg |
24401716 |
T |
|
| Q |
112 |
cattcggactttagttgcaa |
131 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
24401715 |
cattcggactttagttgcaa |
24401696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 321 - 386
Target Start/End: Complemental strand, 24401539 - 24401474
Alignment:
| Q |
321 |
ctagtgaaaatttataattataacatagcacaaatagcagcatccaactttagctacatattttat |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24401539 |
ctagtgaaaatttataattataacatagcacaattagcagcatccaactttagctacatattttat |
24401474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 303
Target Start/End: Complemental strand, 24401587 - 24401557
Alignment:
| Q |
273 |
agatggaataacataagatgatttctcctat |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24401587 |
agatggaataacataagatgatttctcctat |
24401557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University