View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6567_high_6 (Length: 545)

Name: NF6567_high_6
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6567_high_6
NF6567_high_6
[»] chr8 (9 HSPs)
chr8 (17-517)||(40512583-40513092)
chr8 (115-206)||(40526871-40526966)
chr8 (410-457)||(574376-574423)
chr8 (410-457)||(6038297-6038344)
chr8 (417-452)||(39201447-39201482)
chr8 (424-457)||(3757979-3758012)
chr8 (416-457)||(24195247-24195288)
chr8 (429-457)||(18422475-18422503)
chr8 (418-458)||(33445570-33445610)
[»] chr4 (10 HSPs)
chr4 (416-457)||(27655729-27655770)
chr4 (418-458)||(41346756-41346796)
chr4 (423-457)||(20403190-20403224)
chr4 (416-457)||(7282555-7282596)
chr4 (416-457)||(27871400-27871441)
chr4 (416-457)||(52936639-52936680)
chr4 (418-458)||(14136091-14136131)
chr4 (418-458)||(25999397-25999437)
chr4 (418-458)||(35151457-35151497)
chr4 (417-457)||(42756128-42756168)
[»] chr7 (8 HSPs)
chr7 (411-457)||(43539126-43539172)
chr7 (411-457)||(8318834-8318880)
chr7 (409-458)||(964762-964811)
chr7 (424-457)||(29734812-29734845)
chr7 (424-457)||(37307896-37307929)
chr7 (418-459)||(45914401-45914442)
chr7 (418-458)||(2391007-2391047)
chr7 (421-457)||(27908742-27908778)
[»] chr1 (9 HSPs)
chr1 (412-457)||(13401591-13401636)
chr1 (410-458)||(50372382-50372430)
chr1 (419-457)||(13779579-13779617)
chr1 (424-457)||(3528491-3528524)
chr1 (416-457)||(12213991-12214032)
chr1 (423-459)||(14392-14428)
chr1 (418-454)||(6818943-6818979)
chr1 (418-458)||(32030926-32030966)
chr1 (421-457)||(50533074-50533110)
[»] chr2 (9 HSPs)
chr2 (418-458)||(30243250-30243290)
chr2 (418-457)||(22571887-22571926)
chr2 (412-457)||(23782861-23782906)
chr2 (418-458)||(9459078-9459118)
chr2 (429-457)||(29896316-29896344)
chr2 (418-458)||(30089049-30089089)
chr2 (418-458)||(30125653-30125693)
chr2 (417-457)||(30799110-30799150)
chr2 (421-457)||(37984358-37984394)
[»] scaffold0350 (1 HSPs)
scaffold0350 (410-457)||(1240-1287)
[»] chr3 (6 HSPs)
chr3 (418-457)||(33223868-33223907)
chr3 (411-457)||(25441522-25441568)
chr3 (417-458)||(1501449-1501490)
chr3 (405-458)||(12131694-12131747)
chr3 (416-457)||(25289335-25289376)
chr3 (412-457)||(31214628-31214673)
[»] chr6 (2 HSPs)
chr6 (418-456)||(19277574-19277612)
chr6 (417-457)||(14945535-14945575)
[»] chr5 (3 HSPs)
chr5 (423-457)||(29962363-29962397)
chr5 (423-457)||(30012401-30012435)
chr5 (421-458)||(3416582-3416619)


Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Complemental strand, 40513092 - 40512583
Alignment:
Q  17 aaacttcaaccaatgcagtttacactactgtgtctgttcttattctaattcatttattcacaacattaactaactattgtaggctagtctgcaatggatt 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40513092 aaacttcaaccaatgcagtttacactactgtgtgtgttcttattctaattcatttattcacaacattaactaactattgtaggctagtctgcaatggatt 40512993  T
Q  117 ccattgggatcagcaaatgaatgtgccaaagacatagtaaaaagtgcgtgcaggggagatatgtatgtgacaaacccttcatggctcaaagcggtgtttc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40512992 ccattgggatcagcaaatgaatgtgccaaagacatagtaaaaagtgcgtgcaggggagatatgtatgtgacaaacccttcatggctcaaagcggtgtttc 40512893  T
Q  217 cttctaaggtgctttttcctgagttagtggactgggcagaacgacacatctttggcctttggcaaaagccttcttgtaagaacagcgatcttcgtatgtc 316  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  40512892 cttctaagctgctttttcctgagttagtggactgggcagaacgacacatctttggcctttggcaaaagccttcctgtaagaacggcgatcttcgtatgtc 40512793  T
Q  317 taagaataaccaagcgtttaagacagaataataagacaaaattactcttgtgtcgtggtatcttgatttaatttcatatgtaaactgttgttaatgtctt 416  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  40512792 taagaataaccaagcgcttaagacagaataataagacaaaattactctcgtgtcgtggtatcttaatttaatttcatatgtaaactgttgttagtgtctt 40512693  T
Q  417 tgtgaacttagctcagttgatagaaacaatgcataatatata---------agaccaccataaaaaatatacaacctgttggtgtttaaatctatcatcc 507  Q
    ||||| |||| |||||||| |||| ||||| |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40512692 tgtgagcttaactcagttggtagagacaatacataatatatacaaggtatgagaccaccataaaaaatatacaacctgttggtgtttaaatctatcatcc 40512593  T
Q  508 ttcacttatg 517  Q
    ||||||||||    
T  40512592 ttcacttatg 40512583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 40526966 - 40526871
Alignment:
Q  115 ttccattgggatcagcaaatgaatgtgccaaagacatagtaaaaagtgcgtgcaggggagatatgtatgtgaca----aacccttcatggctcaaa 206  Q
    |||||||||| ||| ||  ||||||||||||||||||||| ||| |||| |||||||||||||| |||||||||    ||||||||||||||||||    
T  40526966 ttccattgggttcatcagttgaatgtgccaaagacatagtgaaaggtgcatgcaggggagatatttatgtgacaaaccaacccttcatggctcaaa 40526871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 457
Target Start/End: Original strand, 574376 - 574423
Alignment:
Q  410 atgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||| |||||| |||||||||||||||| | ||||||||||||||||    
T  574376 atgtccttgtgagcttagctcagttgatatagacaatgcataatatat 574423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 6038344 - 6038297
Alignment:
Q  410 atgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||    
T  6038344 atgtcttcgtgaacttagctcagttgatatggacaatgcataatatat 6038297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 452
Target Start/End: Original strand, 39201447 - 39201482
Alignment:
Q  417 tgtgaacttagctcagttgatagaaacaatgcataa 452  Q
    ||||| ||||||||||||||||||||||||||||||    
T  39201447 tgtgatcttagctcagttgatagaaacaatgcataa 39201482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 3758012 - 3757979
Alignment:
Q  424 ttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||||||||| |||||||||||||||||    
T  3758012 ttagctcagttgataggaacaatgcataatatat 3757979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Original strand, 24195247 - 24195288
Alignment:
Q  416 ttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||||||||||||||||  |||||| ||||||||||    
T  24195247 ttgtgaacttagctcagttgatatgaacaatacataatatat 24195288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 457
Target Start/End: Complemental strand, 18422503 - 18422475
Alignment:
Q  429 tcagttgatagaaacaatgcataatatat 457  Q
    |||||||||||||||||||||||||||||    
T  18422503 tcagttgatagaaacaatgcataatatat 18422475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 33445570 - 33445610
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    |||| ||||||||||||| ||| ||||||||||||||||||    
T  33445570 gtgagcttagctcagttggtaggaacaatgcataatatata 33445610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 457
Target Start/End: Original strand, 27655729 - 27655770
Alignment:
Q  416 ttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  27655729 ttgtgaacttagttcagttgatagaaacaatgcataatatat 27655770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 41346756 - 41346796
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  41346756 gtgaacttaactcaattgatagaaacaatgcataatatata 41346796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 457
Target Start/End: Complemental strand, 20403224 - 20403190
Alignment:
Q  423 cttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||||||||||||||| |||||||||||||||||    
T  20403224 cttagctcagttgataggaacaatgcataatatat 20403190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Original strand, 7282555 - 7282596
Alignment:
Q  416 ttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||||||||||||| ||  |||||||||||||||||    
T  7282555 ttgtgaacttagctcagttggtatgaacaatgcataatatat 7282596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Complemental strand, 27871441 - 27871400
Alignment:
Q  416 ttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||||||||| |||||||| |||||| |||||||||    
T  27871441 ttgtgaacttagctcatttgatagagacaatgtataatatat 27871400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Original strand, 52936639 - 52936680
Alignment:
Q  416 ttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||| |||| |||||||||||||||||||| |||||||||    
T  52936639 ttgtgagcttaactcagttgatagaaacaatgtataatatat 52936680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 14136091 - 14136131
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    |||| |||||||||||||||| | |||||||||||||||||    
T  14136091 gtgagcttagctcagttgataaagacaatgcataatatata 14136131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 25999397 - 25999437
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  25999397 gtgaacttagctcagttggtagggacaatgcataatatata 25999437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 35151457 - 35151497
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    ||||||||||||||||| ||| ||||||||||||| |||||    
T  35151457 gtgaacttagctcagtttatataaacaatgcataaaatata 35151497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 42756168 - 42756128
Alignment:
Q  417 tgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||||||||||||||||||||   ||||||||||||||||    
T  42756168 tgtgaacttagctcagttgataaggacaatgcataatatat 42756128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 457
Target Start/End: Complemental strand, 43539172 - 43539126
Alignment:
Q  411 tgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||    
T  43539172 tgtccttgtgagcttagctcagttgataggaacaatgcataatatat 43539126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 457
Target Start/End: Original strand, 8318834 - 8318880
Alignment:
Q  411 tgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||| ||||| |||| ||||||||||||||||||||||||| ||||    
T  8318834 tgtctctgtgagcttaactcagttgatagaaacaatgcataacatat 8318880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 964811 - 964762
Alignment:
Q  409 aatgtctttgtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    |||||| | |||| |||| |||||| ||||||||||||||||||||||||    
T  964811 aatgtcctcgtgagcttaactcagtcgatagaaacaatgcataatatata 964762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 29734845 - 29734812
Alignment:
Q  424 ttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||| |||||||||||||||||||||||    
T  29734845 ttagctcagtcgatagaaacaatgcataatatat 29734812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 37307929 - 37307896
Alignment:
Q  424 ttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||||||||| |||||||||||||||||    
T  37307929 ttagctcagttgataggaacaatgcataatatat 37307896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 45914442 - 45914401
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatataa 459  Q
    |||||||||| | |||||||||| ||||||||||||||||||    
T  45914442 gtgaacttagtttagttgatagagacaatgcataatatataa 45914401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 2391007 - 2391047
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  2391007 gtgaacttagctcagttggtaagaacaatgcataatatata 2391047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 457
Target Start/End: Complemental strand, 27908778 - 27908742
Alignment:
Q  421 aacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  27908778 aacttaactcagttgatagaaacaatgcttaatatat 27908742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 13401591 - 13401636
Alignment:
Q  412 gtctttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||    
T  13401591 gtctttgtgagcttagttcagttgatagagacaatgcataatatat 13401636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 458
Target Start/End: Complemental strand, 50372430 - 50372382
Alignment:
Q  410 atgtctttgtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    ||||| ||| || |||||||||||||||| |||||||||||||||||||    
T  50372430 atgtcattgcgagcttagctcagttgatataaacaatgcataatatata 50372382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 457
Target Start/End: Original strand, 13779579 - 13779617
Alignment:
Q  419 tgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  13779579 tgaacttagctcagttgatatagacaatgcataatatat 13779617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 3528524 - 3528491
Alignment:
Q  424 ttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||||||||||||||||| |||||||||    
T  3528524 ttagctcagttgatagaaacaatgtataatatat 3528491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Original strand, 12213991 - 12214032
Alignment:
Q  416 ttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||| ||||||||||||||||| |||||| ||||||||||    
T  12213991 ttgtgagcttagctcagttgataggaacaatacataatatat 12214032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 459
Target Start/End: Original strand, 14392 - 14428
Alignment:
Q  423 cttagctcagttgatagaaacaatgcataatatataa 459  Q
    ||||||||||||| || ||||||||||||||||||||    
T  14392 cttagctcagttggtataaacaatgcataatatataa 14428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 6818943 - 6818979
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataata 454  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  6818943 gtgagctttgctcagttgatagaaacaatgcataata 6818979  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 458
Target Start/End: Complemental strand, 32030966 - 32030926
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  32030966 gtgaacttagctcagttgttagggacaatgcataatatata 32030926  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 50533074 - 50533110
Alignment:
Q  421 aacttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  50533074 aacttagctcagttggtagaaacattgcataatatat 50533110  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 30243250 - 30243290
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  30243250 gtgaacttagctcagttggtagagacaatgcataatatata 30243290  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Complemental strand, 22571926 - 22571887
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  22571926 gtgaacttagctcagttgatatagacaatgcataatatat 22571887  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 23782861 - 23782906
Alignment:
Q  412 gtctttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||| |||||||| |||| ||| |||||||||||||||||    
T  23782861 gtctttgtgatcttagctctgttggtaggaacaatgcataatatat 23782906  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 458
Target Start/End: Complemental strand, 9459118 - 9459078
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    |||| |||||||||||||||| | |||||||||||||||||    
T  9459118 gtgagcttagctcagttgataaagacaatgcataatatata 9459078  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 457
Target Start/End: Complemental strand, 29896344 - 29896316
Alignment:
Q  429 tcagttgatagaaacaatgcataatatat 457  Q
    |||||||||||||||||||||||||||||    
T  29896344 tcagttgatagaaacaatgcataatatat 29896316  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 30089049 - 30089089
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  30089049 gtgaacttagctcagttggtagggacaatgcataatatata 30089089  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 30125653 - 30125693
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  30125653 gtgaacttagctcagttggtagggacaatgcataatatata 30125693  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 30799150 - 30799110
Alignment:
Q  417 tgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  30799150 tgtgaacttatttcagttggtagaaacaatgcataatatat 30799110  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 37984358 - 37984394
Alignment:
Q  421 aacttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||||||||||||| || ||||||||||||||||||    
T  37984358 aacttagctcagttggtataaacaatgcataatatat 37984394  T

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Target: scaffold0350 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 457
Target Start/End: Original strand, 1240 - 1287
Alignment:
Q  410 atgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||    
T  1240 atgtcttcgtgaacttagctcagttgatatggacaatgcataatatat 1287  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 457
Target Start/End: Original strand, 33223868 - 33223907
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  33223868 gtgagcttagctcagttggtagaaacaatgcataatatat 33223907  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 457
Target Start/End: Complemental strand, 25441568 - 25441522
Alignment:
Q  411 tgtctttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||||||||||||||||||||||| ||   ||||||||||||||||    
T  25441568 tgtctttgtgaacttagctcagttggtatggacaatgcataatatat 25441522  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 458
Target Start/End: Original strand, 1501449 - 1501490
Alignment:
Q  417 tgtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    |||||||||||||||||| ||| | |||||||||||||||||    
T  1501449 tgtgaacttagctcagttaataaagacaatgcataatatata 1501490  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 12131747 - 12131694
Alignment:
Q  405 tgttaatgtctttgtgaacttagctcagttgatagaaacaatgcataatatata 458  Q
    ||||||||||||||||| ||||| ||| ||| || | |||||||||||||||||    
T  12131747 tgttaatgtctttgtgagcttagttcaattggtatagacaatgcataatatata 12131694  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Complemental strand, 25289376 - 25289335
Alignment:
Q  416 ttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||||||||||||| || |||||||| |||||||||    
T  25289376 ttgtgaacttagctcagttggtaaaaacaatgtataatatat 25289335  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 31214628 - 31214673
Alignment:
Q  412 gtctttgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    |||||||||||||||| | ||||| |||||| ||||||||||||||    
T  31214628 gtctttgtgaacttagttaagttggtagaaataatgcataatatat 31214673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 456
Target Start/End: Original strand, 19277574 - 19277612
Alignment:
Q  418 gtgaacttagctcagttgatagaaacaatgcataatata 456  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  19277574 gtgaacttaactcagttgataggaacaatgcataatata 19277612  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 14945575 - 14945535
Alignment:
Q  417 tgtgaacttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||| |||||||||||||||||| ||| ||||||||||||    
T  14945575 tgtgagcttagctcagttgatagagacagtgcataatatat 14945535  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 457
Target Start/End: Original strand, 29962363 - 29962397
Alignment:
Q  423 cttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||||||||||||||||||||||| |||||||||    
T  29962363 cttagctcagttgatagaaacaatgtataatatat 29962397  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 457
Target Start/End: Complemental strand, 30012435 - 30012401
Alignment:
Q  423 cttagctcagttgatagaaacaatgcataatatat 457  Q
    ||||||||||||||||||||||||| |||||||||    
T  30012435 cttagctcagttgatagaaacaatgtataatatat 30012401  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 458
Target Start/End: Complemental strand, 3416619 - 3416582
Alignment:
Q  421 aacttagctcagttgatagaaacaatgcataatatata 458  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  3416619 aacttaactcagttgatagaaacaatgtataatatata 3416582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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