View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_high_7 (Length: 541)
Name: NF6567_high_7
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 39 - 522
Target Start/End: Complemental strand, 14560142 - 14559659
Alignment:
| Q |
39 |
ctctaaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaa |
138 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
14560142 |
ctctaaaaccaaaagtgaatcccacctcaacacttaagaaatttcaatcaattaaactcctttcatgataataacgtgtttcatatgcttgttgtgacaa |
14560043 |
T |
|
| Q |
139 |
gcttttccctccttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
238 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14560042 |
gcttttccctccttcaccaccacagttttgtgtcagtggaggtccacacaactcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
14559943 |
T |
|
| Q |
239 |
ccagtttgtatttttcccaccaagtgattacaagagaggttcataactgaaagaaatgataaccttgcaagctctaaaggaatctcatctcttaagttgt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14559942 |
ccagtttgtatttttcccaccaagtgattacaagagaggttcataactgaaagaaatgataaccttgcaagctctaaaggaatctcatctcttaagttgt |
14559843 |
T |
|
| Q |
339 |
tattagacatgtccaatgactccagatgttttagatttcctaaagaagaaggaatgctacctgagaaagcattttgtgacaagttaagagcatggagtgc |
438 |
Q |
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| T |
14559842 |
tattagacatgtccaatgactccagatgttttagatttcctaaagaataaggaatgctatctgagaaagcattttgtgacaagttaagagcatggagtgc |
14559743 |
T |
|
| Q |
439 |
tgtgagactcataagctccattggtattggcccatcaaatttgttggatgagaaatccaatgaagtaaaggcaatgaaaatttt |
522 |
Q |
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| T |
14559742 |
tgtgagactcataagctccattggtattggcccatcaaatttgttggatgagaaatccaatgaagtaaaggcaatgagaatttt |
14559659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 51 - 291
Target Start/End: Complemental strand, 14569885 - 14569645
Alignment:
| Q |
51 |
aagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaagcttttccctcc |
150 |
Q |
| |
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|||||||| ||| ||||||| ||||||||||| |||||||| ||| ||| || ||| ||||| || ||||||||| ||||||| |||||||||||||||| |
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| T |
14569885 |
aagtgaattccaactcaacacttaagaaattctaatcaattgaacccctgtcgtgaaaataaggtgtttcatatgcttgttgttacaagcttttccctcc |
14569786 |
T |
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| Q |
151 |
ttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatt |
250 |
Q |
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||||||| |||| |||||| |||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||| |||||||||| | ||||| |
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| T |
14569785 |
ttcaccaacacaattttgtgtcagtggaggtccacacaactctttattacctataagtgaatcttcttgaaatgattgaatttgtgttccaggtggtatt |
14569686 |
T |
|
| Q |
251 |
tttcccaccaagtgattacaagagaggttcataactgaaag |
291 |
Q |
| |
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| T |
14569685 |
tttcccaccaaatgagtacaagagaggttcgtaactgaaag |
14569645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 176 - 515
Target Start/End: Complemental strand, 32549371 - 32549032
Alignment:
| Q |
176 |
ggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatttttcccaccaagtgattacaagaga |
275 |
Q |
| |
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||||||||| | ||| |||||||||| |||||||||||| |||||||||||| ||| ||||| |||||| ||||| ||||||||||||| ||| | || | |
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| T |
32549371 |
ggaggtccaaatagcccttcattgccaataaatgaatctgcttgaaatgattgaatctgtgtcccagttggtattcttcccaccaagtggttatatgaaa |
32549272 |
T |
|
| Q |
276 |
ggttcataactgaaagaaatgataaccttgcaagctctaaaggaatctcatctcttaagttgttattagacatgtccaatgactccagatgttttagatt |
375 |
Q |
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||||||| |||| |||||||||||| |||||||||||| ||||||||| | |||||| || | |||| || || ||||| |||| | ||||| |
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| T |
32549271 |
ggttcatgactgcaagaaatgataaacttgcaagctctgtaggaatctctccacttaaggaattcatggacaaatctaaggactcgagatatcggagatt |
32549172 |
T |
|
| Q |
376 |
tcctaaagaagaaggaatgctacctgagaaagcattttgtgacaagttaagagcatggagtgctgtgagactcataagctccattggtattggcccatca |
475 |
Q |
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| |||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| || |||||||||| || ||| |
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| T |
32549171 |
gcttaaagaagaaggtatcttacctgagaaagcattttgtgacaagttaagagcatgaagtgctgaaagattcataagttcttttggtattggtccttca |
32549072 |
T |
|
| Q |
476 |
aatttgttggatgagaaatccaatgaagtaaaggcaatga |
515 |
Q |
| |
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| T |
32549071 |
aagttgttggatgagaaatccagtgaagtgaaagcaatga |
32549032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 332 - 522
Target Start/End: Complemental strand, 14569647 - 14569447
Alignment:
| Q |
332 |
aagttgttattagacatgtccaatgactccagatgttttagatttcctaaagaagaaggaatgctacctgag-aaagcattttgtgacaag-------tt |
423 |
Q |
| |
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|||| |||||||||| |||||||||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||| ||||||||| || |
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| T |
14569647 |
aagtagttattagaccagtccaatgactcaagatgttttagatatcctaaagaaga---aatactacctgagaaaagcattgtgtgacaagttaagactt |
14569551 |
T |
|
| Q |
424 |
aagagcatggagtgctgtgagactcataagctccattggtattggcccatcaaatttg-----ttggatgagaaatccaatgaagtaaaggcaatgaaaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||| ||||| | | ||||||||||||||||| |||||||||| || || || |
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| T |
14569550 |
aagagcatggagtgctgtgagactcataagctcctttgttattggccattcaaagtggttggattggatgagaaatccaaggaagtaaaggaaacgagaa |
14569451 |
T |
|
| Q |
519 |
tttt |
522 |
Q |
| |
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|||| |
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|
| T |
14569450 |
tttt |
14569447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 32549498 - 32549451
Alignment:
| Q |
43 |
aaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaat |
90 |
Q |
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|||||||||||||||||||| |||| || | ||||||||||||||||| |
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| T |
32549498 |
aaaaccaaaagtgaatcccaactcagcactcaagaaattccaatcaat |
32549451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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