View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_1 (Length: 678)
Name: NF6567_low_1
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 13 - 661
Target Start/End: Complemental strand, 7099908 - 7099255
Alignment:
| Q |
13 |
aatattgaagtaaattttgatgatgaggatatattattactcttattgagtttgttgcctaagaaatattgaagtaaaacacatcgatggttgtttaccc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7099908 |
aatattgaagtaaattttgatgatgaggatatattattactcttattgagtttgttgcctaagaaatattgaagtaaaacacatcgatgattgtttaccc |
7099809 |
T |
|
| Q |
113 |
aactcaacctaatatgacctatgtatggggggagagagtaactccacaatcttctataaaatgagtgatacatgaggttacaagaaattagatccaaaag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7099808 |
aactcaacctaatatgacctatgtatggggggagagagtaactccgcagtcctctataaaatgagtgatacatgaggttacacgaaattagatccaaaag |
7099709 |
T |
|
| Q |
213 |
gtcacaaacaacaatcaataattttacccattcatcaagccattgaaccgtcctagagatcccaagagaaaacaagagagaaatctttgatcctaccact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
7099708 |
gtcacaaacaacaatcaataattttacccattcatcaagccattgaaccgtcgtagagatcctaagagaaaacaagagagaaatctttgatcccgccact |
7099609 |
T |
|
| Q |
313 |
aataagatctcactaaccaaggtatttcaaatgtgtttcataatccaaaaatcttatctaaagatacttaactcttagcctcgaagttttataagagttc |
412 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7099608 |
aataagatctcactaaccaaggtatttgaaatgtgtttcataatccaaaaatattatctaaagatactcaactcttagcctcgaagttttataagagttc |
7099509 |
T |
|
| Q |
413 |
cttcctttg-----gtgtcatgagattagccacaaaagaatgagaaaaagttgattttataggtacatatcccgagacatgcgtccaacaaccaaccaac |
507 |
Q |
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| T |
7099508 |
cttcctttcctttagtgtcatgagattagccacaaaagaatgagaaaaggctgattttataggtacatatcccgagacatgcgcccaacaaccaaccaac |
7099409 |
T |
|
| Q |
508 |
atgaacaatgactcatcatattagatctatttagatcaacgagtgccctacaatgggcttgaacctaataattatactattatacccatcttaatcattc |
607 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7099408 |
ataaacaatgactcatcatattagatctatttagatcaacgagtgccctacaatgggcttgaacctaataattatactattatacccatcttaatcattc |
7099309 |
T |
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| Q |
608 |
attacatcgaggatcaaatgaaggcgttaaaaaattgacctagtgcaatgttgg |
661 |
Q |
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| T |
7099308 |
attacatcgaggatcaaatgaaggcgttaaaaaattgacctggtgcaatgttgg |
7099255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 33079672 - 33079792
Alignment:
| Q |
90 |
aacacatcgatggttgtttacccaactcaacctaatatgacctatgtatggggggagagagtaactccacaatcttctataaaatgagtgatacatg-ag |
188 |
Q |
| |
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|||||||| ||| ||||| ||||| || ||| ||||||||||| | |||||||||||| | ||| ||||| |||| |||| ||||||||| | || |
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| T |
33079672 |
aacacatcaatgcttgttaacccagttcgacccaatatgacctacatctggggggagagatcagctctccaatccactatgaaattagtgatacaaggag |
33079771 |
T |
|
| Q |
189 |
gttacaagaaattagatccaa |
209 |
Q |
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| T |
33079772 |
gttacaagaaattagatccaa |
33079792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 324
Target Start/End: Complemental strand, 41163263 - 41163107
Alignment:
| Q |
171 |
aaatgagtgatacat-gaggttacaagaaattagatccaaaaggtcacaaacaacaatcaataatttt-acccattcatcaagccattgaa-ccgtccta |
267 |
Q |
| |
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|||||||||||||| |||||| ||| |||||||||||||||| ||| ||| ||||| | |||||| ||||| | |||||| || | || || | || |
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| T |
41163263 |
aaatgagtgatacaaagaggttccaaaaaattagatccaaaagctcataaagaacaaaccctaatttcgacccagttatcaagtcactcaaacccacata |
41163164 |
T |
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| Q |
268 |
gagatcccaagagaaaacaagagagaaatctttgatcctaccactaataagatctca |
324 |
Q |
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||||||| ||||||||||||||||||| ||||| |||| || ||||| |||||||| |
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| T |
41163163 |
gagatcctgagagaaaacaagagagaaagctttggtccttcctctaatgagatctca |
41163107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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