View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_10 (Length: 499)
Name: NF6567_low_10
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 140 - 489
Target Start/End: Original strand, 21660997 - 21661343
Alignment:
| Q |
140 |
aaaacataatttcaaaaggtcaacattattctttccattaattaggcacgtaaaagaaacattcaaacattcttggaagacaataacattatgctcaagc |
239 |
Q |
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| T |
21660997 |
aaaacataatttcaaaaggtcaacattattcttttcattaattaggcacataaaagtaacattcaaacattcttggaagacaataacattatgctcaagc |
21661096 |
T |
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| Q |
240 |
atcattgaacaaatttgtttctaagcatctaagaaagtgtaaagcagattctaatgttttcattggaaattcactttcctcatcaatttccaactcataa |
339 |
Q |
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| T |
21661097 |
atcattcaacaaatttgtttctaagcatctaagaaagtgtaaagcagattctaatgttttcattggaaattcactttcc---tcaatttccaactcataa |
21661193 |
T |
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| Q |
340 |
tcataagaaatcttcacattaaccactgtcttatcttcttctatggtagatagcttgaaacttgttttgtagaatgagaaaccttgattcaagtatcctc |
439 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21661194 |
tcataagaaatcttcacattaaccattgtcttatcctcttctgtggtagatagcttgaaacttgttttgtagaatgagaaaccttgattcaagtatcctc |
21661293 |
T |
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| Q |
440 |
cttcaaccacttgcaacccaatttcatgggaagaatcatcaagctctgtg |
489 |
Q |
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| T |
21661294 |
cttcaaccacttgcaacccaatttcatgggaagaatcatcaagcactgtg |
21661343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 21660906 - 21661000
Alignment:
| Q |
20 |
cttcatccaacaatcaaaacttgcttctagcacaaaactcataactccaaagaatccatttccaaataggacagatcctccttaggcctttacaaaa |
116 |
Q |
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||||||||||||| ||||| ||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21660906 |
cttcatccaacaaacaaaatttgctccaa--acaaaactcataactccaaagaatccatttccaaataggacagatcctccttaggcctttacaaaa |
21661000 |
T |
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