View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_11 (Length: 477)
Name: NF6567_low_11
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 5216115 - 5216550
Alignment:
| Q |
18 |
tctacaataccacagaaaactgagtcttgcatttcagatttcgttttgctatatatatgcaacaaacaacacttgtctttccactttccacacccaaaaa |
117 |
Q |
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| T |
5216115 |
tctacaataccacagaaaactgagtcttgcatttcagatttcgttttgctatatatatgcaacaaacaacacttgtctttccactttccacacccaaaaa |
5216214 |
T |
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| Q |
118 |
tagaaaatcaagttttctttgatccatttctttctcaaa-ccaaaacctaaggtataatttctttgtaatttcagatattttcannnnnnnnnncttctg |
216 |
Q |
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| T |
5216215 |
tagaaaatcaagttttctttgatccatttctttctcaaaaccaaaacctaaggtataatttctttgtaattttagatattttcattttttttt-cttctg |
5216313 |
T |
|
| Q |
217 |
ttatgaattctatagaagttt-----------aagttggttgttcaaaacagtgattagattaattagcaaggaagtgtaattatgtaactaattaatcg |
305 |
Q |
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| T |
5216314 |
ttatgaattctatagaagtttctgaaacgaccaagttggttgttcaaaacagtgattagattaattagcaaggaagtgtaattatgtaactaattaatcg |
5216413 |
T |
|
| Q |
306 |
ggtttctgtttcatcgcttaggaaacaagataacggcttcattcgttcctataattatccatattgtttcacgttattatactttgaatatttcaaaact |
405 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5216414 |
ggtttctgtttcattgcttaggaaacaagataacggcttcattcgttcctataattatgcatattgtttcacgttattatactttgaatatttcaaaact |
5216513 |
T |
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| Q |
406 |
atgtacagcctgtgattatgtgaatctgtattctttc |
442 |
Q |
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| T |
5216514 |
atgtacagcctgtgattatgtgaatctttattgtttc |
5216550 |
T |
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