View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_12 (Length: 462)
Name: NF6567_low_12
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 38321001 - 38320540
Alignment:
| Q |
1 |
catatctaaaaatgaatacaaggtgaagttagagaagaattgttgtgatgtgaaaaagttgggggaagaacattgtattaagaataactgatcaaccacc |
100 |
Q |
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| T |
38321001 |
catatctaaaaatgaatacaaggtgaagttagagaagaattgttgtgatgtgaaaaagttgggggaagaacattgtattaagaataactgatcaaccacc |
38320902 |
T |
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| Q |
101 |
acgaatataagagatttt-ggtcgtgtttgttttgtttataagagagtgggttaaattgaattgaacatgttttgtctatgacaatgtgacaataattgt |
199 |
Q |
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| T |
38320901 |
acgaatataagagttttttggtcgtgtttgttttgtttataagagagtgggttaaattgaattgaacatgttttgtctatgacaatgtgacaataattgt |
38320802 |
T |
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| Q |
200 |
gtggtctctttttcaaataactgctccacacacactacttagtcgctagttttgtggacacatgtcaattatgcactttgattttataactacgcccgtg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320801 |
gtggtctctttttcaaataactgctccacacacactacttagtcgctagttttgtggacacatgtcaattatgcactttgattttataactacgcccgtg |
38320702 |
T |
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| Q |
300 |
gaaattaagcatataccatatggatatcaaattgttcatgtttgtgaccacgatggccatattattagtactaaatttgtacc-nnnnnnnnggtataaa |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| ||| |
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| T |
38320701 |
gaaattaagcatataccatatggatatcaaattgttcatgtttgtgaccacgatggccatattattaatactaaa-ttgtacctttttttttggta-aaa |
38320604 |
T |
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| Q |
399 |
ctaagcacttctagcacactataaattaatcacgtaccatttcacgcaattaatgttgtgcatc |
462 |
Q |
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| T |
38320603 |
ctaagcacttctagcacactataaattaatcacgtaccatttcacgcaattaatgttgtgcatc |
38320540 |
T |
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