View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6567_low_13 (Length: 459)
Name: NF6567_low_13
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Complemental strand, 40330663 - 40330231
Alignment:
| Q |
11 |
agaatatgattgggcaaacagaggatgataaaaatatataaaaggggccaagcagaggacaagacaaactgttcaggtaggtccaaatgacggcaaaccc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40330663 |
agaaaatgattgggcaaacagaggatgataaaaata----aaaggggccaagcagaggacaagacaaactgtttaggtaggtccaaatgacggcaaaccc |
40330568 |
T |
|
| Q |
111 |
ttagctgtatagaaagcaatgttataagttttaacatcttccattttaattggacaatgaactgattgattattctcttctttttcctttcccttaattt |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40330567 |
ttagctgtatagaaagcaatgttatatgttttaacatcttccattttaattggacaatgaactgatttattattctcttctttttcctttcccttaattt |
40330468 |
T |
|
| Q |
211 |
tctttccaaaacttcatgtata--tatagaccctactctcatttccattccacaatcaaatattttcttcatcaaacacattcatataatacacaacatt |
308 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40330467 |
tctttccaaaacttcatgtatatatatagaccctactctcatttccattccacaatcaaatattttcttcatcaaacacattcatataatacacaatatt |
40330368 |
T |
|
| Q |
309 |
atacaatccatggccatattttacccttttagacacaatactgtcttttttatgttgttgatgtggattctcttatcatgtgttttt-gtttggggacga |
407 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
40330367 |
atacaatccatggccatattttccccttttaaacacaatagtgtcttttttatattgttgatgtggattctcttatcatgtgtttttggtttggggaaga |
40330268 |
T |
|
| Q |
408 |
ccagcaacttttaatcaagactttcatgtcacgtggt |
444 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40330267 |
ccagcaacttttaatcaagattttcatgtcacgtggt |
40330231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 51 - 444
Target Start/End: Complemental strand, 40311049 - 40310689
Alignment:
| Q |
51 |
aaaggggccaagcagaggacaagacaaactgttcaggtaggtccaaatgacggcaaacccttagctgtatagaaagcaatgttataagttttaacatctt |
150 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40311049 |
aaaggggccaagcagaggacaa-----actgcttaggtaggtcctaatgacttcaagcccttagctgtatagaaagcaatgttatatgttttaacatctt |
40310955 |
T |
|
| Q |
151 |
ccattttaattggacaatgaactgattgattattctcttctttttcctttcccttaattttctttccaaaacttcatgtatatata---gaccctactct |
247 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||| ||| ||||||| |
|
|
| T |
40310954 |
ccatttcaatgagacaatgaactgattgattattcttttctttttcctttc---------------caaattctcatgtataaatattggacactactct |
40310870 |
T |
|
| Q |
248 |
catttccattccacaatcaaatattttcttcatcaaacacattcatataatacacaacattataca-atccatggccatattttacccttttagacacaa |
346 |
Q |
| |
|
| ||| |||| |||||||||||||||||||| | ||||| |||| || | ||||| ||||||||||||||||||||| |||| | |||| |
|
|
| T |
40310869 |
cgtttacattgcacaatcaaatattttcttcct-----------atatattacattacgtaatacacatccatggccatattttacccctttaaaaacaa |
40310781 |
T |
|
| Q |
347 |
tactgtcttttttatgttgttgatgtggattctcttatcatgtgtttttgtttggggacgaccagcaacttttaatcaagactttcatgtcacgtggt |
444 |
Q |
| |
|
| |||||||||||||||||| |||||||| || |||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40310780 |
tggtgtcttttttatgttgttattgtggattgtcgtatcatctgttt------ggggaagaccagcaacttttaatcaagattttcatgtcacgtggt |
40310689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 51 - 444
Target Start/End: Complemental strand, 40321125 - 40320765
Alignment:
| Q |
51 |
aaaggggccaagcagaggacaagacaaactgttcaggtaggtccaaatgacggcaaacccttagctgtatagaaagcaatgttataagttttaacatctt |
150 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40321125 |
aaaggggccaagcagaggacaa-----actgcttaggtaggtcctaatgacttcaagcccttagctgtatagaaagcaatgttatatgttttaacatctt |
40321031 |
T |
|
| Q |
151 |
ccattttaattggacaatgaactgattgattattctcttctttttcctttcccttaattttctttccaaaacttcatgtatatata---gaccctactct |
247 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||| ||| ||||||| |
|
|
| T |
40321030 |
ccatttcaatgagacaatgaactgattgattattcttttctttttcctttc---------------caaattctcatgtataaatattggacactactct |
40320946 |
T |
|
| Q |
248 |
catttccattccacaatcaaatattttcttcatcaaacacattcatataatacacaacattataca-atccatggccatattttacccttttagacacaa |
346 |
Q |
| |
|
| ||| |||| |||||||||||||||||||| | ||||| |||| || | ||||| ||||||||||||||||||||| |||| | |||| |
|
|
| T |
40320945 |
cgtttacattgcacaatcaaatattttcttcct-----------atatattacattacgtaatacacatccatggccatattttacccctttaaaaacaa |
40320857 |
T |
|
| Q |
347 |
tactgtcttttttatgttgttgatgtggattctcttatcatgtgtttttgtttggggacgaccagcaacttttaatcaagactttcatgtcacgtggt |
444 |
Q |
| |
|
| |||||||||||||||||| |||||||| || |||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40320856 |
tggtgtcttttttatgttgttattgtggattgtcgtatcatctgttt------ggggaagaccagcaacttttaatcaagattttcatgtcacgtggt |
40320765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 40314000 - 40313879
Alignment:
| Q |
85 |
aggtaggtccaaatgacggcaaacccttagctgtatagaaagcaat----gttataagttttaacatcttccattttaattggacaatgaactgattgat |
180 |
Q |
| |
|
|||||||||| || | |||||| | ||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
40314000 |
aggtaggtcctaaggtcggcaagcacttagctgtatagaaagcaatatatgttatatgttttaacatcttccatttcaatgagacaatgaactgattgat |
40313901 |
T |
|
| Q |
181 |
tattctcttctttttcctttcc |
202 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
40313900 |
tattctcttcgttttcctttcc |
40313879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 40324076 - 40323955
Alignment:
| Q |
85 |
aggtaggtccaaatgacggcaaacccttagctgtatagaaagcaat----gttataagttttaacatcttccattttaattggacaatgaactgattgat |
180 |
Q |
| |
|
|||||||||| || | |||||| | ||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
40324076 |
aggtaggtcctaaggtcggcaagcacttagctgtatagaaagcaatatatgttatatgttttaacatcttccatttcaatgagacaatgaactgattgat |
40323977 |
T |
|
| Q |
181 |
tattctcttctttttcctttcc |
202 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
40323976 |
tattctcttcgttttcctttcc |
40323955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 316 - 444
Target Start/End: Complemental strand, 40313787 - 40313665
Alignment:
| Q |
316 |
ccatggccatattttacccttttagacacaatactgtcttttttatgttgttgatgtggattctcttatcatgtgtttttgtttggggacgaccagcaac |
415 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| | |||||||||||||||| |||||||| || |||||| ||||| ||||| |||||||||| |
|
|
| T |
40313787 |
ccatgaccatattttacccttttaaaaacaatggtatcttttttatgttgttattgtggattgtcgtatcatctgttt------ggggaagaccagcaac |
40313694 |
T |
|
| Q |
416 |
ttttaatcaagactttcatgtcacgtggt |
444 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
40313693 |
ttttaatcaagactttcatgtcacgtggt |
40313665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 316 - 444
Target Start/End: Complemental strand, 40323863 - 40323741
Alignment:
| Q |
316 |
ccatggccatattttacccttttagacacaatactgtcttttttatgttgttgatgtggattctcttatcatgtgtttttgtttggggacgaccagcaac |
415 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| | |||||||||||||||| |||||||| || |||||| ||||| ||||| |||||||||| |
|
|
| T |
40323863 |
ccatgaccatattttacccttttaaaaacaatggtatcttttttatgttgttattgtggattgtcgtatcatctgttt------ggggaagaccagcaac |
40323770 |
T |
|
| Q |
416 |
ttttaatcaagactttcatgtcacgtggt |
444 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
40323769 |
ttttaatcaagactttcatgtcacgtggt |
40323741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University