View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_14 (Length: 446)
Name: NF6567_low_14
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_14 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Complemental strand, 43207271 - 43206844
Alignment:
| Q |
20 |
aatttattcattaatttcgcatattgtcgcgaagcacctaaagcttacatcctagataaaataat-taaattacattgctgagagttattgagatgttgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||||| |
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| T |
43207271 |
aatttattcattaatttcgcatattgtcgcgaagcacctaaagcttacatcctagataaaataaactacattgctgagctgagagttattgagatgttgc |
43207172 |
T |
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| Q |
119 |
gaaggcctttaaggttcttgccatttgtgaactctaagtaacatgtgaaacctnnnnnnnntcctaatttaaaagaacactaaatctcaaatctgtaatt |
218 |
Q |
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| T |
43207171 |
gaaggcctttaaggttcttgccatttgtgaactctaagtaacatgtgaaacctaaaaaaaatcctaatttaaaagaacactaaatctcaaatctgtaatt |
43207072 |
T |
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| Q |
219 |
gcaagatcatgtggtgcttcaaatatggcagaaaatgaaaaaacccaaacccataacatagttttcagattttttactgcactgctctttagttttagtt |
318 |
Q |
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| T |
43207071 |
gcaagatcatgtggtgcttcaaatatggcagaaaatgaaaaaacccaaacccataacatagttttcagattttttactgcactgctctttagttttagtt |
43206972 |
T |
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| Q |
319 |
agtttatttagaatgaacggtgcatgcaagttaattacttatagtttcatttgttaatactttaataagctatatttatcagttaaaaaattgtattatg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
43206971 |
agtttatttagaatgaacggtgcatgcaagttaattacttatagtttcatttgttaatactttaataagctatacttatgagttaaaaaattgtattatg |
43206872 |
T |
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| Q |
419 |
aattgagagaaatgaatgaatactcatt |
446 |
Q |
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| T |
43206871 |
aattgagagaaatgaatgaatactcatt |
43206844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 390
Target Start/End: Complemental strand, 43186484 - 43186277
Alignment:
| Q |
183 |
taatttaaaagaacactaaatctcaaatctgtaattgcaagatcatgtggtgcttcaaatatggcagaaaatgaaaaaacccaaacccataacatagttt |
282 |
Q |
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| T |
43186484 |
taatttataagaacaataaattctaaatctgtaatttcacaaacctgtggtgcctcaaacatggcaaaaaatgaaaaacccataaac---aacatagttt |
43186388 |
T |
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| Q |
283 |
tcagattttttactgcactgctctttagttttagttagtttatttagaatgaacg----gtgcatgcaagttaattacttatagtttcatttgttaatac |
378 |
Q |
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| T |
43186387 |
tcagatttttgactgcactgttctttagttttagtta-tttgttcagaatgaatgaatcgtaaatgcaagttaattgtttatagtttgttttgttcataa |
43186289 |
T |
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| Q |
379 |
tttaataagcta |
390 |
Q |
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| T |
43186288 |
tttaataagcta |
43186277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 446
Target Start/End: Original strand, 18835497 - 18835531
Alignment:
| Q |
412 |
tattatgaattgagagaaatgaatgaatactcatt |
446 |
Q |
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| T |
18835497 |
tattatgaattgagagaagtgaatgaatactcatt |
18835531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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